Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57820 769 / 0 ORTH2, VIM1 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT5G39550 704 / 0 ORTH1, VIM3 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G66040 684 / 0 ORTH4, VIM4 VARIANT IN METHYLATION 4, ORTHRUS 4, Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G66050 682 / 0 ORTH5, VIM2 VARIANT IN METHYLATION 2, ORTHRUS 5, Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G57800 670 / 0 ORTH3, VIM5 VARIANT IN METHYLATION 5, ORTHRUS 3, zinc finger (C3HC4-type RING finger) family protein (.1) AT4G08590 462 / 4e-158 VIM6, ORTHL, ORL1 VARIANT IN METHYLATION 6, ORTHRUS-LIKE 1, ORTH-LIKE 1, ORTHRUS-like (.1.2) AT5G13960 91 / 8e-19 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT4G13460 85 / 5e-17 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G22740 85 / 7e-17 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 82 / 6e-16 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038731 [exp] 481 / 3e-163 AT1G57800 611 / 0.0 VARIANT IN METHYLATION 5, ORTHRUS 3, zinc finger (C3HC4-type RING finger) family protein (.1) Lus10031984 [exp] 89 / 5e-18 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 85 / 6e-17 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10003017 [exp] 81 / 1e-15 AT2G35160 251 / 1e-73 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 81 / 2e-15 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10014457 [exp] 79 / 6e-15 AT2G33290 444 / 2e-149 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) Lus10023714 [exp] 78 / 9e-15 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10001011 [exp] 75 / 1e-13 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10035115 [exp] 74 / 1e-13 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G162400 [exp] 767 / 0 AT1G57820 813 / 0.0 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Potri.001G067700 [exp] 756 / 0 AT1G57820 811 / 0.0 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Potri.008G173100 [exp] 93 / 2e-19 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.010G064300 [exp] 91 / 8e-19 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.002G237950 [exp] 90 / 2e-18 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 90 / 2e-18 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.014G143900 [exp] 89 / 2e-18 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.001G036800 [exp] 73 / 2e-13 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.006G027600 [exp] 73 / 3e-13 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G188700 [exp] 73 / 3e-13 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10039127 pacid=23150338 polypeptide=Lus10039127 locus=Lus10039127.g ID=Lus10039127.BGIv1.0 annot-version=v1.0 ATGGCTCCTGCAATCCAACTACCTTGCGACGGCAACGGCGACTGCATGGTCTGCAAGGTCAAACCACCGGCAGAAGAAACCCTAACCTGCTCTACCTGTG CTGCTCCGTGGCATGTTCCCTGCCTGGCTACTCCGATTGAGTCCCTGGCCTCCGTTCTCCAGTGGGAGTGTCCCGACTGCAACCTCGATGCTCCCGCTGC TGCCCCGGTTAAATCCGGGAATGAGCTGGTGGCTGCAATCCAAGCGATCGAGGCGGATTCCAGCCTCTCCGAGCAGGAGAAGGCTCGTAAGAGGCAGGAG TTGCTCAGTGGAAAGAGCGTTGACCAGGGCGATGATGACGAGGAACGTAAGGGGAAAGGCCAGATGGGTGCTGCGATTGATGCTTTGAAACTCCTTGGCG ACAGCTTCAATTGCGCCTTTTGCATGCAGCTGCCTGAGAGGCCAGTCACTACGCCATGCGGCCACAATTTCTGCTTGAAATGCTTCGAGAAATGGATGGG GCAAAAGAAGTCCACCTGTGCAAAGTGCCGAGCAGAAATTCCTAGGAAGATGGCGCTCCAGCCCCGCATTAATGCTTCACTTGTTGCTGCTATCCGTTTG GCCAAGGTATCGAGGTCCATTTCTGATGGAGCACCTGGCAAGGTGTATCATTTTGTGCACAACCAAAACAGGCCGGACGAGGCTTATACTACTGAGCGTG CTAAAAAGACCGGTAAGGCTAATGCTGCCAGTGGCAAGATTTTTGTGACTGTGGCTCCTGATCATTTTGGACCCATCCCTGCTGAGAACGACCCTCTGAG AAACCAGGGTGTTCTTGTTGGGGAATGCTGGGAAGATAGACTGTCAACCAGGCAATGGGGTACTCATCGTCCTCATGTTTCTGGTATTCATGGGCAGAGT AGTTATGGAGCACAGTCTGTTGCTCTCTCTGGAGGCTATCAAGATGATGAAGACCATGGTGAATGGTTCCTATACACTGGGAGCGGAGGGAGGGATCTTA CCGGAAACAAAAGGACAAATAAAGACCAGTCCTCTGACCAGAAGTTCGAGGCGTATAACCAGGCCCTTAAAGTTAGCTGCTTGAAAGGGTATCCGGTTAG AGTTGTAAGGTCCCACAAGGAAAAGCGATCTAATTATGCGCCGGACGCTGGAGTTCGCTATGATGGAGTCTACCGGATCGAGAAATGTTGGAGGAAAGTT GGGATACAGGGTTTCAAGGTCTGCAGGTATCTGTTTGTCCGATGCGACAATGAGCCAGCTCCCTGGACAAGTGATGAGCATGGGGACAGGCCTAGACCAT TGCCTGTAATCCCGGAGTTGAAGAATGCCTTTGACTTGGCCGAGAGGAAAGATAGTCCGTCATGGGACTTCGACGTGAAGTTCAGCTGCCACCTATGCCG GCAAGTGATGAACGTGCCGGTCACAACACCATGCTCCCACAACTTCTGCAAGGAATGCCTTGATAAGAAGTTCCCAGACAAGAAGTTTGTTCAAGAGAGG GGCAGAGGCGGCCGCACTCTCCGGTCCAAGAAAATCGTGCTGAACTGCCCTTGCTGCCCAACCGACATCTCCGATTTCCTCAAGAACATCAAGGTGAACA GTGACGTGATGAATGCAATCAATGGGCTGAAGAAAGCGATGGACGAATCAAAGGCAGCGGCCGAAGCTGCAGCCGCATCGGCTAGGGGGGAAGTGGTGGT GAGTCTGAGGAGCTGGAGGAGGAAGAGGAAGCGGAGGATGAAGATGGCAATGGCGAGAGCAAGAGACAGAAAGTTGATGGAAATGATTCACCTTCAAGCC CACTCCATGTCCAGTCCCCTGAGAACTAAGAATGGAAAGAAGAAAGCCAGAGGAGGGAGCCGAAAGCTAGAAAAGCATTTTTTGCGACCCTAA
AA sequence Show only first row Show all	>Lus10039127 pacid=23150338 polypeptide=Lus10039127 locus=Lus10039127.g ID=Lus10039127.BGIv1.0 annot-version=v1.0 MAPAIQLPCDGNGDCMVCKVKPPAEETLTCSTCAAPWHVPCLATPIESLASVLQWECPDCNLDAPAAAPVKSGNELVAAIQAIEADSSLSEQEKARKRQE LLSGKSVDQGDDDEERKGKGQMGAAIDALKLLGDSFNCAFCMQLPERPVTTPCGHNFCLKCFEKWMGQKKSTCAKCRAEIPRKMALQPRINASLVAAIRL AKVSRSISDGAPGKVYHFVHNQNRPDEAYTTERAKKTGKANAASGKIFVTVAPDHFGPIPAENDPLRNQGVLVGECWEDRLSTRQWGTHRPHVSGIHGQS SYGAQSVALSGGYQDDEDHGEWFLYTGSGGRDLTGNKRTNKDQSSDQKFEAYNQALKVSCLKGYPVRVVRSHKEKRSNYAPDAGVRYDGVYRIEKCWRKV GIQGFKVCRYLFVRCDNEPAPWTSDEHGDRPRPLPVIPELKNAFDLAERKDSPSWDFDVKFSCHLCRQVMNVPVTTPCSHNFCKECLDKKFPDKKFVQER GRGGRTLRSKKIVLNCPCCPTDISDFLKNIKVNSDVMNAINGLKKAMDESKAAAEAAAASARGEVVVSLRSWRRKRKRRMKMAMARARDRKLMEMIHLQA HSMSSPLRTKNGKKKARGGSRKLEKHFLRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	0	1
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	1.0	0.9685
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	3.7	0.9268
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	4.9	0.9454
AT4G12540			unknown protein		Lus10025820 [exp]	6.3	0.9235
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10030540 [exp]	8.9	0.9332
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	10.2	0.9434
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10005743 [exp]	10.7	0.9240
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	11.2	0.9408
AT1G69070			unknown protein		Lus10036815 [exp]	11.4	0.9292
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	13.9	0.9415

Compare expression of checked genes

Lus10039127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.