Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44200 219 / 6e-66 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1) AT2G44195 127 / 8e-35 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038730 [exp] 584 / 0 AT2G44200 377 / 6e-127 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G000200 [exp] 350 / 8e-117 AT2G44200 221 / 2e-66 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1) Potri.016G000501 [exp] 43 / 1e-05 AT2G44200 53 / 1e-09 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12542 [flax] [poplar] CWC25 Pre-mRNA splicing factor PF10197 [flax] [poplar] Cir_N N-terminal domain of CBF1 interacting co-repressor CIR
Representative CDS sequence Show only first row Show all	>Lus10039128 pacid=23150714 polypeptide=Lus10039128 locus=Lus10039128.g ID=Lus10039128.BGIv1.0 annot-version=v1.0 ATGGCGCTGAAGTTCTTGAACAAGAAGGGATGGCATACCGGCAGCTTGAGGAACATAGAGAACGTCTGGAAAGCCGAGCAGAAACACGAGGCCGAGGAAA AGAAATTGGACGAGCTCCGTAAGCAGATCCAGGAGGAACGCGAGCGATCGGAGTTCCGTCAACTCCAGGAGCAAGCCGGCCTTGTTCCGAGGCAGGAACG GTTGGAATTTCTGTACGATGGAGGACTCTCCGTCGGGAAAGGAAACGCCAGCACTTCTTCTGGCGCCGGAGTTGCATTCAAGGAGCTTGAACAGGCTGTT TCCGGCGGCGGCACCAAAGCTTCGGAATCAGCTCCTCCTACGTCTTCTTCTGCTGCTGCGACTGGTGCACCGGGAGCTTTGTTTGAGGACAAGCCTCAGT CTGCAAATGACGCCTGGAGGAAGCTTCACTCTGATCCTTTACTTATGATCCGCCAGCGGGAGCAAGAAGCTCTTGCCCGCATTAAGAACAACCCTGTCCA GATGGCTCTCATTCGCAAATCGGTTCAAGGAAATGGAGAGAAGGAGAAGAAGGGTGGTGACAGAAAGGATCACAAGAAGAAACACCGTCGTAGCGACAAG CATTCATCATCGTCGAAGCGCCTATCAGATTCGGAAGATGATGGTAGAAACGGAGAGAGGAACAGAAGTTCTCACAAACACAGGAGTTCGAAATATCACG ATCATTCTGCTTCCGATTCGGAAGATAATGGTAGAAATAGAGACAGGAAGAGAAGTTCTAACAAACACAAGAGCTCGAAACACCATGATCATCCTGCTGC TTCGGACGACGAATCAAGTGGGAGAGATAACCGGAAAAGAAAGGATACATCTAGGGGATTCCGAGACCGTTCTCCTGGCCGGTTCTCCGAGAAAGCAGAT GCCACAACACATCGTGACCGACCGGAAAGAGACCATGAGAGGCCAAAGAACGATAAGAGATACTCTGATGGCTTGCCGGGCCGTGAAGCAGGACCTTACA GAACATCTGATTCCGCAGTCAACCAGGATTCCTATAGGAGACGCAGGAACGCACCACCGAAACTCACGGAAGAAGAAAGAGCAGCAAGGCTGAGGGAGAT GCAGTTGGACGCCGAGATCCATGAAGAGCAGAGGTGGAAGCGATTGAAGAAGGCCGACGAGGCGGATGTACGGGAAGACAGCCAAGCGAAGCAAACTCTT GGGGGGAAGAACTTTTTAGATGCTGCTCAGAAAAGCATCTATGGTGCCGAGAAGGGTGGTAGCTCCACCATTGAGGAAAGCGTGCGCCGACGAGCTTATT ACTCTCAAAGGTCCGAGATGGGTGGAAACGCCTTTCGACGATGA
AA sequence Show only first row Show all	>Lus10039128 pacid=23150714 polypeptide=Lus10039128 locus=Lus10039128.g ID=Lus10039128.BGIv1.0 annot-version=v1.0 MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEEKKLDELRKQIQEERERSEFRQLQEQAGLVPRQERLEFLYDGGLSVGKGNASTSSGAGVAFKELEQAV SGGGTKASESAPPTSSSAAATGAPGALFEDKPQSANDAWRKLHSDPLLMIRQREQEALARIKNNPVQMALIRKSVQGNGEKEKKGGDRKDHKKKHRRSDK HSSSSKRLSDSEDDGRNGERNRSSHKHRSSKYHDHSASDSEDNGRNRDRKRSSNKHKSSKHHDHPAASDDESSGRDNRKRKDTSRGFRDRSPGRFSEKAD ATTHRDRPERDHERPKNDKRYSDGLPGREAGPYRTSDSAVNQDSYRRRRNAPPKLTEEERAARLREMQLDAEIHEEQRWKRLKKADEADVREDSQAKQTL GGKNFLDAAQKSIYGAEKGGSSTIEESVRRRAYYSQRSEMGGNAFRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44200			CBF1-interacting co-repressor ...		Lus10039128 [exp]	0	1
AT3G62580			Late embryogenesis abundant pr...		Lus10010016 [exp]	6.8	0.7884
AT1G03910			unknown protein		Lus10027731 [exp]	7.9	0.7442
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	18.7	0.7824
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10043430 [exp]	26.5	0.7341
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10033937 [exp]	27.9	0.7774
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10033545 [exp]	28.1	0.7570
AT1G76920			F-box family protein (.1)		Lus10028591 [exp]	31.0	0.7563
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	36.6	0.7684
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	47.6	0.7657
AT1G07940			GTP binding Elongation factor ...		Lus10040378 [exp]	50.9	0.7659

Compare expression of checked genes

Lus10039128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.