Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44190 220 / 1e-65 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) AT3G60000 201 / 2e-58 QWRF6 QWRF domain containing 6, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT3G19570 140 / 2e-35 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G30710 140 / 2e-35 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G24070 129 / 1e-31 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT1G49890 125 / 2e-30 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT5G43160 119 / 2e-30 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1) AT4G25190 110 / 4e-26 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G20815 69 / 3e-12 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038729 [exp] 672 / 0 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10033792 [exp] 146 / 2e-37 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10014636 [exp] 143 / 5e-37 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10018698 [exp] 129 / 1e-31 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10010780 [exp] 127 / 3e-31 AT4G30710 398 / 5e-132 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010779 [exp] 127 / 5e-31 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10022176 [exp] 126 / 1e-30 AT4G30710 408 / 1e-134 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10018555 [exp] 101 / 2e-22 AT2G20815 222 / 1e-65 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10007759 [exp] 95 / 2e-22 AT5G43160 157 / 5e-48 QWRF domain containing 9, Family of unknown function (DUF566) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G000400 [exp] 273 / 4e-86 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.016G000300 [exp] 261 / 2e-81 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.014G017500 [exp] 152 / 2e-39 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.001G295800 [exp] 146 / 2e-37 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.002G119500 [exp] 146 / 2e-37 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.009G089800 [exp] 145 / 4e-37 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.006G181700 [exp] 140 / 1e-35 AT4G30710 274 / 2e-83 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.018G103800 [exp] 139 / 5e-35 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.001G126000 [exp] 103 / 5e-24 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.013G146100 [exp] 91 / 4e-19 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [flax] [poplar] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Lus10039129 pacid=23150694 polypeptide=Lus10039129 locus=Lus10039129.g ID=Lus10039129.BGIv1.0 annot-version=v1.0 ATGGAAGACCACACCGTCACAGCCGCCGCTCCAGCCAGTCTGCCGCCTCCACAGAGGAGGCCGAGAGTCAGAGAGGTAAGCTCTAGGTTCATGACCCCTG TGGCGACCTCTTCCTCTTCCTTCTCCCCTCTCGCGCAGCATCATCAGAGATCCAGCTCCGTCCAAAAGCAACGCCGTCACCTCGAATTCGACAATAAGGA CTCCTCCTCGGTCGACAGCTCCACTTCCAGTACATCCTCCGCCGCCGCCGCCCCAACTCCGCATCGGAGGCATCCGCCGCAGAGCCATCGCACTGTGTCC TCCAAGGTGTTCGGGGAGAGGCAAGATCCAGCAGCAAGATCTCACCGTCCGGACACTCCTGCCCTAACCGCTCCCCCAATGTCGATTCGACGGTTGCCAC AGCAACGTTCATCCGGGAACAACAATGCCTCATCCGCCAATCTCACCCACACAGCTGCGGCCAAACTGCTTCAGTCCTCGACTGGCATGTCGTCTTCGGT CAATTTCAGTTCGAATTCGAGCGAGAGTTGTTCCGGCGATAACCGCAGCAGCAGCCACGGTTTGAGAAGCAGCAGCTCTACGCGGTCTCTTCCGGATCTC CGATCGTCCATGCCGGAGCCGAGTAGACTGCTGACAGAGAGGAACCTCAATACGCCGAGTGTTTGTTCCGATTCTACAACAGCAACAGCAACAACAACTT CATCGAAAGTATCTGCTTCTTCCCCTTGCTCCCGTTCTCTTGATCTTCAGCGATCTTCCTCCGAGAATTCTTCCTTCTTCCATTCCATCAAAGCCTCAAA GAAATCGTCAAGGCAGCAATTCAATCATCACTCTTTCAAGACGGGAGGAGGTCTTCCCTTGCCGCCAGTACCTCACGCTAAGCTTCCAACGGATGCTGCA GCAGCTGTTTCAAGGAAGGGGAGAAAAGGATCAAACCAGCAAGAGGACATCCACAATCTCAGAATGATTCAAAATCGCTATCTGCAATGGAGATACGCAA ATGCGAAATCTGAGGCTGCTACACAAGCCCAGAGTAGAGAAGCCGAGATGATGGTGTATTCTCTGGGTTTCAGAATTTCAGAAATGTACGAGTCGGTCAC GAGGAAACGCATCGAACTTGGTCGTTTGCAGAGACTGGCAACCCTATCGACAGTCCTAGAGACTCAAATGCCCTTACTGGACGAATGGACAACTCTCGAC ACAGAATATAACGAGTCTCTATCAGATACAACACAAGCTTTATTAAACACCTCAGTCCAACTTCCAATCGGTGGAAATGTCAAGGCCGATGCCAGAGAGA TAATGGAGGCACTAACCTCTTCGGTGAAGTTGATGGAGTCAATAGCTTCGCAAATAGACCGATACATGCCAAAGGCAGACGAAACGGACAAGCTGGTGTC GGAATTAGCTAGAGTGAGCGGAGGAGAAACATCTCGGGTTCAAGAATGTGGAGATCTCTTGTCCTCGATGCATAAATCACAGATAGAAGAGTGCAGCGTG CGAGGGCAGATCATTCAGTTCAATCATCGACCAGCTTCTACCCAAATTTTGACTGCTTAG
AA sequence Show only first row Show all	>Lus10039129 pacid=23150694 polypeptide=Lus10039129 locus=Lus10039129.g ID=Lus10039129.BGIv1.0 annot-version=v1.0 MEDHTVTAAAPASLPPPQRRPRVREVSSRFMTPVATSSSSFSPLAQHHQRSSSVQKQRRHLEFDNKDSSSVDSSTSSTSSAAAAPTPHRRHPPQSHRTVS SKVFGERQDPAARSHRPDTPALTAPPMSIRRLPQQRSSGNNNASSANLTHTAAAKLLQSSTGMSSSVNFSSNSSESCSGDNRSSSHGLRSSSSTRSLPDL RSSMPEPSRLLTERNLNTPSVCSDSTTATATTTSSKVSASSPCSRSLDLQRSSSENSSFFHSIKASKKSSRQQFNHHSFKTGGGLPLPPVPHAKLPTDAA AAVSRKGRKGSNQQEDIHNLRMIQNRYLQWRYANAKSEAATQAQSREAEMMVYSLGFRISEMYESVTRKRIELGRLQRLATLSTVLETQMPLLDEWTTLD TEYNESLSDTTQALLNTSVQLPIGGNVKADAREIMEALTSSVKLMESIASQIDRYMPKADETDKLVSELARVSGGETSRVQECGDLLSSMHKSQIEECSV RGQIIQFNHRPASTQILTA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10039129 [exp]	0	1
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028434 [exp]	1.4	0.9859
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041886 [exp]	3.5	0.9809
AT4G02800			unknown protein		Lus10014668 [exp]	4.6	0.9781
AT3G15550			unknown protein		Lus10025757 [exp]	5.0	0.9712
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10021988 [exp]	6.3	0.9686
AT4G02800			unknown protein		Lus10000658 [exp]	7.5	0.9697
AT5G27550			P-loop containing nucleoside t...		Lus10029914 [exp]	7.7	0.9729
AT4G17000			unknown protein		Lus10035651 [exp]	9.2	0.9656
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10033674 [exp]	9.2	0.9700
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	11.5	0.9660

Compare expression of checked genes

Lus10039129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.