Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33410 1331 / 0 NUP160, SAR1, ATNUP160 ARABIDOPSIS NUCLEOPORIN 160, SUPPRESSOR OF AUXIN RESISTANCE1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038728 [exp] 2865 / 0 AT1G33410 1387 / 0.0 ARABIDOPSIS NUCLEOPORIN 160, SUPPRESSOR OF AUXIN RESISTANCE1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G078600 [exp] 1749 / 0 AT1G33410 1511 / 0.0 ARABIDOPSIS NUCLEOPORIN 160, SUPPRESSOR OF AUXIN RESISTANCE1 (.1.2) Potri.003G151850 [exp] 40 / 0.001 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF11715 [flax] [poplar] Nup160 Nucleoporin Nup120/160
Representative CDS sequence Show only first row Show all	>Lus10039130 pacid=23150410 polypeptide=Lus10039130 locus=Lus10039130.g ID=Lus10039130.BGIv1.0 annot-version=v1.0 ATGGGGAGCAGGTCGACTCTGGTTGGTGTTGAAGTCCCAATCATCGGCAGCGATTCCGTCAAATGGCTCGACCTCTCTATTCCTCCTTCCGCCGCCGGCA ATGCTGTTCCGCCGCAGTTCCCTCCTCTCACCGACGACTGCGCCTCCTGCTGCACCGTTGGAGATCCTCCTCTCTATTTCATCTGGAGGATACATAAGTC TCACCCGAACATTCTGGAGTTGCTTCAGCTCTCTGTACAGTCAGAGTTTCCAAAGATTGGACTGCGCATTGCTTTCCCTGATGCCCTTGCTCCTTTTGCT CATATTCAACAGAATCAGGATGGTTCAAGACTTCACAATCCGTACTCAATATATGTATTGGCCGTCTCCGGAGTTGCTTACCTTATCAAACTCAGAACTG TTACTTCTTACTCTATGCTATCTGTTTTCCCGAGGGACGAGCTTTTTGAGTTCGATTTGAGTAGCTATTCCATCAATGCGCCGATAACAAGTGTAGCAGC TAGTTCTGGTTGTGTTATAGTTGGGCGTGGTGATGGTTCTGTTGCCTGTTTTCGGCTTAGCTTACTCGATCACATGGTTCCAGGATTTTTGAATGAGTTG CGCGATGATTCGGGAATTAGTCGTCTATGGGGTTTCATGTCAAGGGGTAGAGCTGTAGGACCTGTGGTGGATTTGGTCGTCAGGGAATTGGATGGACTAC CATTTTTATTTGTGCTTCATTCTAATGGGATGTTGCAAATATGGGATTTATCAAGTCATAGCAAGGTTTTCAGTCAAGGCATGAATGTTCTAAATTCTGA AGGCAATTCTTCATTGTTCTTTGGATTTTGGTACAAATTTACTCATAGTTCCTTGGAGAAGCCCCTCTTTAGTACAACATCTCTACGGTTGTGGGTCAGT GAAACTAGCGCCAAGTCCGGGATGATTCCCTTGGCCATCTTGCACAGACAGTCTCTGGAAAGTAGCATGGAGGTGATATGTGTCTACAGCCTGCACTATG CTTGGGCAGAGAGAACTAGTCTTTCTGTGGGATCTTCAATACTAAGCATCCCTTTAGAGGAAGGACATTGCTTTGATGTAAAGCTTTCATCAGACAAGAT ATGGATTTTAAAAGACAGTGGCTTGGCGTTTCATAACATATTTGATACAAATTTTGACGTGAAAGAATCCCACTGCTATGCTTTGCAAGAAGAATTTGTC GCCGAGCAGCTATTCCAAAGTGCTGATCTTTCTTCAGATGATCTCCTTGAGCAGATTGTGCCATTTATGTCCTCTATATTCGTGCGAAGGCTGCTGCTCC CCGGGGTTTATCACAGTAATGTCCTGCGTTCAACTCTGCTAGATTACAATAAACAGTGGACTGAGACTGAATTCCAGTCCCTGACTGCTGATGGACTGAA AAAAGAAATTCGTTCACTTGTAGATGATGAGGGTCATGGTCAAACTCCAACATCTACTTATTACTTCTGGAAGAATTTCTTCGGCTGTTATTTCAGTAAC TGGTGCAAGAACAATTCACCATGCGGTTTGCTTGTTCAGCCTGTCACTGGTGGAATTGGCTTAGTCAGGAAGGATTCTGTGTCTCTATTTCGCAATATGG CAAACATTGAACTCATGGCTGAGGGTTGTCTTCAGGAATTTGTTGGCCTCTTGAAGCCTGGATTGGAATTGTCAGGTGATGATGAGCATGAGATTCTCTT GGAAGTACTCAAATGTGTTACTAGTATGAGCCAGCCACTTGGGAAAACTGCATCTGCTATTCTCTACGAGGCACTTGTTAGCAAATCTAATATATCATTG GAGGATTTTGTTTCTCAGCTACTGAAAATCGTGCAAACTGGGTGTACACCTTTATCATTATTTCGCAACTCGGATCTTACTGCTGATTTTGATTTGGGAA AGGAAGCTGATCACAGGAATCTCAGAAAATTCTCCGCAGAGATGATTTTATCTGTTCATGCCTTGTTTAGAAAAGCTACCTCTTGGGGAAAAGTTTTGAA TGCCGTGGAGAGCTACATCCAATCTCTTGTACCCCAGAAGATCCTACAGAACTTAGACACAGAAGTGTCCTTCAGTGTAACCACGTCTGCCCTGGCGCAG GCTATTTCTCAAGTTGCACAGGCGATGTTTGAGTCAGCATTGGACATTCTCCTGTTTGTCAACTATCTCCTCAACATTAGTGGAAAGATTAACATGTTGC ATTCTGATGTATCTAGGATGCAACTTGAATTAGTCCCAATGATTCAGGACACTCTTTATGAGTGGTTGATAGTTTATTTCTTACTCACGACCCCTTCTGA GCCTCCCGGGATTGAAGATTTTAGCTGTCAACTTTCATCATTGTGTATTGATAGCAAGAATGGTGGAAAATCATGGAGCGACAAATTTGGAAAATGCGGT TTTACGTTGGCCTTTGTTCTTCTGATGTCATATCAAACTTCATCTCAAAGCCTGGGCCGTTATTCCTCACACACTATTCCTAATCCCACACAAATCATTA CTGCAGTACAAGATGTTACTAGCTGGATAATTTGGGGTAATACTAGGGTTGAATCAAATTCGTCAACAAGGCATTATGCTGAGCTTGGATTGACCCTTCT CAGGCATGGCCAGTACTATGCTGCTGAGTGTTTGTTGAGCATTGTAGAGGCCAATATGCAACGGGAGAAGATATTTAGAAGTCTTCAAGAAAATGATGGT GATTGGTGTGTACTTCAACACCTTTTGGGCTGTTGTCTCCTTGCACAGGCACGGTTTGGGTTCCCTGGTATGCTGAAAGAGAGGAAAATTTGTGAAGCTG TTCGTTGTTTCTTCAGAGCTTCTTCTGGAGAACAAGCATCAAAATCTTTGCAAGATTTGTCTCATGATACAGGATTTCCACCTCTTTGCTTAGATGCCCC CGTTTCATCTGCTGCATGGAAGCTACATTACTACCAATGGGCCATGCAAATATTTGAGCAGTATAGCTTCAATGAAGGTGCTTACCAGTTTGCTCTTGCT GCACTTGAGCAAGTTGATGAGGCTACAAGTCCGAGAGATGGATCTGATATGGAGCACACACTTGACGAATCATCAGTTAGTGTCAAGGGACGATTGTGGG CTAATGTTTTCAAGTTCACTTTAGACCTGAATCGCTTCTATGATGCATACTGTGCAATAATTTCAAATCCAGATGAAGAAAGCAAACAGATCTGCCTCCG GCGTTTTATCATAGTACTTTATGAGCGTGGAGCAATGAAGGTTCTATGTGATGGGAAATTGCCATTTACAGGTTTAGTTGAAAAGATAGAGAACGAGCTT GCCTGGAAGGCGGAGCGTGCAGATATAATGGCAAAGCCTAACCTTTATAAGTTGCTCTATGCATTTGAAATGCATAGACATAACTGGCGGAAGGCAGCAG GTTATATATACGAGTATTCATTCCGATTAAAGACAGAAGTGTTGGTTAAAGATCAAAAGCACTCGTCACTGTTTCTGCAAGAGAGGCTGAATGGTATCTC TGCTGCAATCAACGCATTGCATCTTGTTCATCCAGCATATGCTTGGATTGATCTGCAGTCCGAGAAAACATCGCATTTTATTGAAGGTTATCCACATAAA AAGGCCAGACAGACTGAAAGTGAACAATTAGCTCATGGTCATGGTCAGTCTCAGAAAGAGCAAGAACAATCCTATATTGATCTTGATAAACTTGAGGATG AGTTTGTGCTGACTTCAGCTGAATACACTCTGTCACTAGCAAATATTGAACGGAGTTCTACAGGAAAAGAAGCACCGTCAGTTTTGGTCAATACATTGGT CCAGGCCAACCTATATGATATGGCATTTACAGTTATTTTGAAATTCTGGAAGGGATCAGGACTGAGGAGGGAGCTGGAAAGAGCCTTCTCTGCTATGTCA TTGAAATGCTTTCCAAGTAAATTCAGCTCCACCTCTACAGACGATCGTTTCAGGATTAACCAACTTCTTCTGACATCCTCTGAAGAAAATAATCAATGCT CACCCGGAATGGGGTCCATGTATCAGCAACCTAAGGGGAATTCTCAGTGGGGAACTCTCGAGTTTTATCTTGAGAAGTATATAACCTTCCATGCTGGATT GCCAGTAACTGTCGCTGAGACTTTGCTCCGCACCGATCCCCATATTGAATTGCCTCTTTGGCTTGTACGAATGTTCAAGGATGACCGCCGGGACAGGACA TTAGGGATGACTGGACAAGAATCAAACGCTGCTTCCTTGCTCCGACTTTATGTAAATTGTGGTCGGCAAATGGAAGCTGTAAATCTCCTGATTGAGTACA TCGATTCATTTGCCACAGCGAGATCATCAAACCTAGTGAAATGTAAAAGGCCACTATCTTCATGGTTCCCATATTCGACCATGGAGCTGTTGTGGTGCCA ACTTGAGGATTCAATTAGAGCCGGTCGTTTGGTCGATCAATGCGAGAAGCTAAAAACTCTGTTACATGGAGCTTTACACAAGCATCTGAAGCTTTTGAAG GTGGATTCTGAAGATACAATGGCTGCTGCTTCTTGA
AA sequence Show only first row Show all	>Lus10039130 pacid=23150410 polypeptide=Lus10039130 locus=Lus10039130.g ID=Lus10039130.BGIv1.0 annot-version=v1.0 MGSRSTLVGVEVPIIGSDSVKWLDLSIPPSAAGNAVPPQFPPLTDDCASCCTVGDPPLYFIWRIHKSHPNILELLQLSVQSEFPKIGLRIAFPDALAPFA HIQQNQDGSRLHNPYSIYVLAVSGVAYLIKLRTVTSYSMLSVFPRDELFEFDLSSYSINAPITSVAASSGCVIVGRGDGSVACFRLSLLDHMVPGFLNEL RDDSGISRLWGFMSRGRAVGPVVDLVVRELDGLPFLFVLHSNGMLQIWDLSSHSKVFSQGMNVLNSEGNSSLFFGFWYKFTHSSLEKPLFSTTSLRLWVS ETSAKSGMIPLAILHRQSLESSMEVICVYSLHYAWAERTSLSVGSSILSIPLEEGHCFDVKLSSDKIWILKDSGLAFHNIFDTNFDVKESHCYALQEEFV AEQLFQSADLSSDDLLEQIVPFMSSIFVRRLLLPGVYHSNVLRSTLLDYNKQWTETEFQSLTADGLKKEIRSLVDDEGHGQTPTSTYYFWKNFFGCYFSN WCKNNSPCGLLVQPVTGGIGLVRKDSVSLFRNMANIELMAEGCLQEFVGLLKPGLELSGDDEHEILLEVLKCVTSMSQPLGKTASAILYEALVSKSNISL EDFVSQLLKIVQTGCTPLSLFRNSDLTADFDLGKEADHRNLRKFSAEMILSVHALFRKATSWGKVLNAVESYIQSLVPQKILQNLDTEVSFSVTTSALAQ AISQVAQAMFESALDILLFVNYLLNISGKINMLHSDVSRMQLELVPMIQDTLYEWLIVYFLLTTPSEPPGIEDFSCQLSSLCIDSKNGGKSWSDKFGKCG FTLAFVLLMSYQTSSQSLGRYSSHTIPNPTQIITAVQDVTSWIIWGNTRVESNSSTRHYAELGLTLLRHGQYYAAECLLSIVEANMQREKIFRSLQENDG DWCVLQHLLGCCLLAQARFGFPGMLKERKICEAVRCFFRASSGEQASKSLQDLSHDTGFPPLCLDAPVSSAAWKLHYYQWAMQIFEQYSFNEGAYQFALA ALEQVDEATSPRDGSDMEHTLDESSVSVKGRLWANVFKFTLDLNRFYDAYCAIISNPDEESKQICLRRFIIVLYERGAMKVLCDGKLPFTGLVEKIENEL AWKAERADIMAKPNLYKLLYAFEMHRHNWRKAAGYIYEYSFRLKTEVLVKDQKHSSLFLQERLNGISAAINALHLVHPAYAWIDLQSEKTSHFIEGYPHK KARQTESEQLAHGHGQSQKEQEQSYIDLDKLEDEFVLTSAEYTLSLANIERSSTGKEAPSVLVNTLVQANLYDMAFTVILKFWKGSGLRRELERAFSAMS LKCFPSKFSSTSTDDRFRINQLLLTSSEENNQCSPGMGSMYQQPKGNSQWGTLEFYLEKYITFHAGLPVTVAETLLRTDPHIELPLWLVRMFKDDRRDRT LGMTGQESNAASLLRLYVNCGRQMEAVNLLIEYIDSFATARSSNLVKCKRPLSSWFPYSTMELLWCQLEDSIRAGRLVDQCEKLKTLLHGALHKHLKLLK VDSEDTMAAAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	0	1
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	1.4	0.9580
AT4G30990			ARM repeat superfamily protein...		Lus10026222 [exp]	2.0	0.9450
AT4G10320			tRNA synthetase class I (I, L,...		Lus10041706 [exp]	3.7	0.9372
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	4.0	0.9516
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10011299 [exp]	4.9	0.9276
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10040306 [exp]	5.3	0.9232
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	6.2	0.9479
AT4G38760			Protein of unknown function (D...		Lus10007578 [exp]	6.7	0.9441
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	6.8	0.8931
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	7.5	0.9342

Compare expression of checked genes

Lus10039130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.