Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01950 1342 / 0 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT1G55610 904 / 0 BRL1 BRI1 like (.1.2) AT3G13380 876 / 0 BRL3 BRI1-like 3 (.1) AT4G39400 803 / 0 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 516 / 2e-163 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 451 / 3e-138 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 441 / 1e-134 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 432 / 1e-132 Leucine-rich receptor-like protein kinase family protein (.1) AT1G74360 427 / 9e-131 Leucine-rich repeat protein kinase family protein (.1) AT5G53890 416 / 2e-127 AtPSKR2 phytosylfokine-alpha receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038726 [exp] 1874 / 0 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10033533 [exp] 845 / 0 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 842 / 0 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 828 / 0 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 825 / 0 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038875 [exp] 484 / 2e-150 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 478 / 4e-148 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10005403 [exp] 428 / 8e-132 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10009213 [exp] 427 / 3e-131 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G140500 [exp] 1465 / 0 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 1440 / 0 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.011G169600 [exp] 894 / 0 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 892 / 0 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.005G086500 [exp] 798 / 0 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G078100 [exp] 796 / 0 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G141200 [exp] 511 / 1e-160 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 504 / 5e-158 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G398500 [exp] 439 / 7e-136 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.011G116900 [exp] 429 / 4e-132 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039132 pacid=23150511 polypeptide=Lus10039132 locus=Lus10039132.g ID=Lus10039132.BGIv1.0 annot-version=v1.0 ATGCTACTTCCCCTCCTCCTCGGCGGACTGTTCTCCGACGTCGCATTATCATCAGTCGACCAGCAGCGTTCCTTAAAGACCGACGCGGCTGCACTCCTCA TGTTTAAACACGCGATCACCTCCGACCCGAAGGGAGTCCTCTCCGATTGGGTCCCGGCTCGACTCCCTTGCTCCTGGTTCGGAGTCACTTGCTACCTCGG CCGAGTCAGCCAGCTCGATCTCGCCTCCTCCAGCCTTGCTGCCGATTCCACCTCGTTCGATCCGTTCTCCTCCCTCGACGCCCTCACTTCCCTCAACCTC TCTTCCAACAACTTCACCTCCACCAACTCAACCTCTCTCCTCCGCCTCCCTCCTTCCTTACAACAGCTCAGCCTCCACTCTGTCGGCCTGCTCGGTCCGT TACCGGACTCGTTCCTCTCCTCCCACCCTAACCTCCTCCGCCTCGACCTCTCCCTCAACAATCTCACCACTCCCTCATTATCATCCTCATCCGATTCCGC CATTGCTGCAACAGCCAATTACAAGCTTCAGGTCCTCGACCTTTCTGACAACAACTTCACCGGACCGATCTCTTCCCTTCTTGATATCATAATCGGCACT AACAGCTCATTGCTTCAGCTTGACCTGTCGAAGAACCATCTGATCGGTTCGATTCCTGTCTCCATCTCGAATTGTACCTCTTTACAAACCATAAACCTCT CCTTCAACCTCCTATCATCCTCCATTCCTCCATTAGGCAACCTCCGCTCCTTACAGCGGCTCGATCTGTCGCATAACCATCTCACCGGATGGATCCCTTC CGACCTGGGGAATGCTTGCAGTTCTTTACTCGAGTTGAAGCTCTCCTTCAACAACATTTCTGGTTCAATCCCTAATTCCCTGTCGTCTTGCTCCTGGCTC CAGCTGCTTGATCTCTCCACCAACAACATTTCAGGGCCGTTCCCTGATTCCGTCCTGAAAACTTTAACTTCTTTGGAGACGTTGATATTGAGCAGCAACC TCATTTCTGGACCGTTCCCGGTCTCGATTTCGTCATGTAAGAATCTGAAGGTTGCCGATTTCAGTTCCAACAGGTTTTCTGGTGATTTCCCGGGAGAGAT ATGCCCAGGGGCGTCGTCTTTGGAGGAACTGAGGATGCCGGATAATCTCATAACCGGACCAATCCCGGCTCAGCTATCACGCTGCTCGAAACTCAGAGCT ATTGATTTCAGCTTGAACTACTTGAACGGCTCCATCCCGTCGGAGCTCGGAGATCTCGAGAATCTGGAGCAGCTTATAGCCTGGTTCAACGGGCTGGAAG GTGTGATCCCGCCGGAATTGGGGAAATGCAGGAACCTGAAGGATGTGATCTTGAACAACAACCACCTCACGGGACCGATTCCGGTCGAGCTCTTCGGCTG CAGCAGTTTGGAATGGGTGTCACTAACCAGCAACGAAATCAGCGGCCAAATCCCTAAGGAAGTCGGACTCCTTCCCAGGCTAGCCGTTCTGCAACTTGCG AATAATAGCTTGAGCGGGGAAATACCTGACGAGCTCGGGAACTGCAGCAGCTTGGTGTGGCTAGATCTGAACAGCAACAAGTTCACCGGCGAAATTCCGT CTCGCCTCGGCCGTCAACTCGGATCCAAGGCCCTGACGGCAATTCCTTCAGGGAGCACCATCGTGTTCGTCAGAAACGTCGGGAATTCCTGTAAAGGAGT CGGCGGACTTTTAGAATTCGCCGGAATCAGACCGGAAAGGCTGCTACTGGTACCTACGCTAAGATCCTGCGATTTCACGAGGCTGTATTCCGGACCGGTG CTTAGTCTGTTCACTCAGTACCAAACCCTAGAATACTTGGATCTATCCTATAACGAGCTTCGCGGGAAAATCCCCGACGAATTCGGGAATATGATGGCTC TCCAAGTCCTTGAGCTCTCCCACAACCGTCTTTCCGGCGAAATCCCGGCGTCCCTAGGACAGCTGAAGAACTTGGGAGTGTTCGACGCTTCACACAATCG TCTCCAGGGAGAAATCCCCGATTCCTTCTCCAATCTCTCCTTCTTAGTCCAAATCGACCTCTCCAACAACGAATTGACCGGTCAGATTCCACAGAGAGGA CAGCTCAGCACTCTCCCCGCCACTCAATACGCCAACAACCCGGGACTCTGCGGTGTCCCGCTACCGGACTGCAAGTTAGTCCTCTCTCCAGGAGCTGCTG CCCCTCTGCGCGGGCGTCTTGCCGCGGCAGCGGGGGCGGCCAGAGACCGCCGCGAGAGCGAAGGGAGGAGATCGGCGTCCTCCACATGGACGAACAGCAT CATCCTAGGGGTACTCATCTCTGTAGCATCGATCTGCATCCTCGTAGTGTGGGGGATAGCAATGCGAGTGAGGCACAAGGAATCGCAGCGGGCGAAGATG CTACACAGCCTGCAAGCTTCCCACGCCGCCACAACCTGGAAGATCGACAAGGAGAAAGAACCTTTAAGCATCAACGTCGCGACATTCCAACGCCAGCTGA GGAAGCTGAAATTCTCGCAGCTGATCGAAGCGACCAACGGATTCTCGGGGGAGAGCATGATCGGCTGCGGGGGGGTCGGAGAAGTTTTCAAGGCGACTTT GAAAGACGGATCTCGAGTTGCAATCAAGAAGCTCATCAGGTTGAGCTGCCAAGGAGACAGAGAATTCATGGCGGAAATGGAGACATTGGGTAAGATCAAG CATCGGAACTTAGTGCCATTGCTGGGTTACTGCAAAGTAGGAGAAGAGAGGCTATTGGTTTACGAGTACATGGAATTCGGAAGCTTGGAGGAAGTATTGC ACGGGAGACACGCCAGGGATAAAAATGCAGTGGTTTTGAATTGGGAGGAGAGGAAGAAGATAGCCAGAGGAGCTGCAAAAGGATTATGCTTCCTTCATCA CAATTGCATCCCTCATATAATCCACAGGGACATGAAATCCAGCAACGTGCTTCTGGATAAAGAGATGGAGGCGAGAGTTTCGGATTTCGGGATGGCTCGA CTGATAAGCGCACTAGACACTCATCTGAGTGTCAGCACTCTGGCGGGAACTCCGGGGTATGTCCCACCGGAGTACTACCAGAGTTTTCGGTGCACAGCCA AGGGAGATGTTTATTCTCTCGGCGTGGTTTTGCTGGAGTTGGTGACGGGGAAGAGGCCCACCGATAAGGAGGATTTCGGGGATACCAACTTGGTCGGGTG GGCGAAGATGAAGGTGAGGGAAGGGAAGCAGATGGAGGTGATTGACCGTGAGTTGCTGCCCAAGCTTCTGGTTCGCGGTGGAGAACGCAACGAGGGGGAG GAAGAGGAGAAAGATGAAGAGGCGGATGAGGAGGTGAAGGAAATGGTGAGGTACTTGGAGATAACGTTGCAGTGTGTGGATGATTTCCCTTCGAGAAGGC CTACCATGTTGCAGGTTGTCGCCATGCTTAGGGAGCTCAACGTTGGTAGCAGCGCATGA
AA sequence Show only first row Show all	>Lus10039132 pacid=23150511 polypeptide=Lus10039132 locus=Lus10039132.g ID=Lus10039132.BGIv1.0 annot-version=v1.0 MLLPLLLGGLFSDVALSSVDQQRSLKTDAAALLMFKHAITSDPKGVLSDWVPARLPCSWFGVTCYLGRVSQLDLASSSLAADSTSFDPFSSLDALTSLNL SSNNFTSTNSTSLLRLPPSLQQLSLHSVGLLGPLPDSFLSSHPNLLRLDLSLNNLTTPSLSSSSDSAIAATANYKLQVLDLSDNNFTGPISSLLDIIIGT NSSLLQLDLSKNHLIGSIPVSISNCTSLQTINLSFNLLSSSIPPLGNLRSLQRLDLSHNHLTGWIPSDLGNACSSLLELKLSFNNISGSIPNSLSSCSWL QLLDLSTNNISGPFPDSVLKTLTSLETLILSSNLISGPFPVSISSCKNLKVADFSSNRFSGDFPGEICPGASSLEELRMPDNLITGPIPAQLSRCSKLRA IDFSLNYLNGSIPSELGDLENLEQLIAWFNGLEGVIPPELGKCRNLKDVILNNNHLTGPIPVELFGCSSLEWVSLTSNEISGQIPKEVGLLPRLAVLQLA NNSLSGEIPDELGNCSSLVWLDLNSNKFTGEIPSRLGRQLGSKALTAIPSGSTIVFVRNVGNSCKGVGGLLEFAGIRPERLLLVPTLRSCDFTRLYSGPV LSLFTQYQTLEYLDLSYNELRGKIPDEFGNMMALQVLELSHNRLSGEIPASLGQLKNLGVFDASHNRLQGEIPDSFSNLSFLVQIDLSNNELTGQIPQRG QLSTLPATQYANNPGLCGVPLPDCKLVLSPGAAAPLRGRLAAAAGAARDRRESEGRRSASSTWTNSIILGVLISVASICILVVWGIAMRVRHKESQRAKM LHSLQASHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSGESMIGCGGVGEVFKATLKDGSRVAIKKLIRLSCQGDREFMAEMETLGKIK HRNLVPLLGYCKVGEERLLVYEYMEFGSLEEVLHGRHARDKNAVVLNWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDKEMEARVSDFGMAR LISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSLGVVLLELVTGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDRELLPKLLVRGGERNEGE EEEKDEEADEEVKEMVRYLEITLQCVDDFPSRRPTMLQVVAMLRELNVGSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10039132 [exp]	0	1
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10018726 [exp]	1.4	0.9507
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028716 [exp]	1.7	0.9465
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10014358 [exp]	3.9	0.9295
AT3G52480			unknown protein		Lus10029407 [exp]	5.1	0.9487
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10025879 [exp]	6.6	0.9455
AT1G22030			unknown protein		Lus10015473 [exp]	6.6	0.9148
AT4G11950			Protein of unknown function (D...		Lus10024479 [exp]	8.4	0.9258
AT3G57880			Calcium-dependent lipid-bindin...		Lus10016280 [exp]	11.2	0.9292
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10024808 [exp]	14.1	0.9163
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10034652 [exp]	15.5	0.9116

Compare expression of checked genes

Lus10039132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.