Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01980 802 / 0 ATSOS1, SOS1, ATNHX7 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) AT1G14660 753 / 0 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2) AT1G79610 78 / 2e-14 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 68 / 2e-11 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1) AT5G55470 45 / 0.0004 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013798 [exp] 919 / 0 AT2G01980 819 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Lus10038725 [exp] 245 / 3e-74 AT2G01980 229 / 9e-70 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Lus10038727 [exp] 65 / 4e-10 AT1G79610 749 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) Lus10039131 [exp] 60 / 1e-08 AT1G79610 677 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) Lus10016583 [exp] 44 / 0.0008 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100900 [exp] 944 / 0 AT2G01980 1363 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Potri.008G140700 [exp] 919 / 0 AT2G01980 1345 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Potri.007G100500 [exp] 127 / 9e-33 AT2G01980 73 / 7e-15 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Potri.016G000200 [exp] 72 / 2e-12 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10039133 pacid=23150595 polypeptide=Lus10039133 locus=Lus10039133.g ID=Lus10039133.BGIv1.0 annot-version=v1.0 ATGGCGAGTAGTATTAGTAGTAGTAGTAGCAGTATCATGGACCTTGACCATATCGGCTTCACAGTTTTGGTAGAGGAGGCCTCCCCGGAATCATCTTCAA ATCCAACAGACGCCGTCATCTTCTTCGGCTTGTCTCTAGTGCTCGGGATCGCCAGCAGGCACGTCTTGCGCGGCACTCGTGTTCCTTACACCGTCGCTTT ACTCATCATCGGCATTGTCCTCGGATCCTTAGAATATGGAACTAGTCATAAATTAGGGAAGATCGGAGATGGTATCCGACTTTGGGCGAGTATTGATCCT GACCTTCTGTTGGCTATTTTCCTTCCTGCTCTGCTGTTTGAGAGTTCCTTCTCTATGGAACTCCATCAAATTAAGAGATGCATGGCGCAAATGCTTCTAC TTGCTGGTCCAGGAGTTTTGCTCTCGACATTTTTCCTTGGATCGGCGTTGAAGCTCATCTTTCCCTATTCATGGAACTGGAAAACATCATTGTTACTTGG GGGGCTGTTAAGTGCCACCGACCCTGTTGCTGTTGTTGCTCTTTTGAAAGAGCTCGGTGCAAGCAAAAAACTTAGTACGATTATTGAAGGAGAATCATTA ATGAATGATGGTACAGCTATTGTGGTCTATCAGCTTTTCTATCGGATGGTTCTTGGACACAGTTATGGTGGGGGTGCGATAATTAAATTCTTGACACAAG TGTCACTTGGAGCTGTAGGTATTGGTCTGGCTTTCGGGATCGCCTCTGTTTTGTGGCTTGGGTTTATTTTTAATGACACGGTGATTGAGATCTCACTCAC GCTTGCCGTGAGCTATGTTGCTTACTTCACTGGACAAGAGGGCGCCGGTGTCTCGGGGGTTCTGACTGTGATGACTTTAGGAATGTTCTATGCTGCAGTT GCTAAGACTGCTTTCAAGGGTGATGGTCAACAAAGCTTGCATCATTTTTGGGAAATGATTGCTTACATTGCGAATACTTTAATCTTCATCTTGAGTGGTG TTGTTATAGCTGAAGGTGTTCTGAGCAGTGACAGCATTTTCCATAACCACGGACATTCTTGGGGATACCTTGTTCTTCTGTACGTTTTGGTCCAGCTTTC TCGTTGTATAGTTGTTGGAGTTTTATTTCCTTTTCTGCGGTATTTTGGTTACGGGTTGGACTGGAAAGAGGCCACTATTCTCATATGGTCAGGTCTTCGA GGAGCAGTTGCATTGTCGCTTTCTCTATCTGTTAAGGCAAGTTTCCTTTGTGAAATGTCTTACAATTTCATTTCAGCCTTTGCAAGGGAGGAGCAGAGGT TGGGACGGCGAACTAGTGATAGCTCAGCTTTTATCAGCCCTGAGACGGGAAAACTGTTTGTTTTCTTCACTGGAGGAATTGTGTTTCTGACACTTATTGT AAATGGATCAACTACCCAATTTGTTTTACGTCTTTTGGATATGGGCAAGCTGTCGGCTACCAAGAAACGTGTATTGGAGTATACAAGATATGAAATGTTG AATAGAGCTCTAGAGGTTTTTGGTGATCTCGGAGATGACGAAGAACTTGGACCAGTGGACTGGCCCACAGTTAAAAGATATATTAAGACCTTGAGCAGTT TGGAAGGAGAAAGTGTACATCCCCATGAACCATCTGAAACTGGTCTTGACCCTACAAATCTGAAAGATCTTCGTATACGCCTTCTTAATGGTGTTCAGGC TGCCTACTGGGTGATGCTTGAAGAGGGAAGGATTACACAGGGCACCGCAAATATTTTGATGCAGTCTATAGATGAAGCGATGGACTCGGCAGCTCATGAG CCTTTATCTGATTGGAAGGGCTTAAAATCAAATGTGAATTTTCCAAGCCACTACAAGTTCCTCCAGACAAGCTACTGCCCCCCAAAACTTGTTACTTATT TCACTGTTGAGAGGCTGGAATCTGCATGTTATATCTGTGCTTCATTTCTGCGTGGCCACAGAATTGCACGGCAGCAGCTGCATGACTTTATAGGCGCCTG GTTTCCTACTAGAAAAATGACAAAGGAGCATACTGTAGAAATCATATCAATTCTCCTTTTAATCTTAGTTCTTAGCTCAGAAGCTTTTTATTACATATTG GCAGATCTAATTTGTCACTATTGTGTGATTAGCAGCTATGCTGAGATCTTATTCTATCATGCTCTTGTAGGCGACAGCAATATTGCTTCCATTGTCATTA GTGAAAGCGAGGCAGAAGGAGAAGATGCAAGGAAGTTCTTGGAGGATGTTCGTGTTACATTTCCTCAGGTGTTACGTGTAGTGAAGACGAGACAAGTAAC ATATTCAGTGCTTAACCACTTAATTGAGTATGTTCAAAATCTTGAGAAGACGGGGTTGTTAGAGCAGAAAGAGATGCTTCATCTTCATGATTCTGTGCAG ACTGACTTGAAAAGGCTGCTGAGAAATCCTCCTCTTGTAAAGATACCCAAAATAAATGATTTGATCAATGTACACCCGCTGTTGGGTGCTCTCCCTCCTG CCATCCGTGAACCACTAGCAGGTTCAAGCAAAGAAATAATGAAACTGCGTGGTGTTCCGATTTACAGAGAAGGCTCCAATCCCACTGGTGTGTGGTTCAT TTCTAACGGCGTTGTCAAGTGGACAAGTAAGAGCATGAGGAGCAAGTACTCGCTTCATCCAACTTTCGCCCATGGTAGTACACTGGGACTGTACGAGGTG CTAGTACGAAAGCCTTACATCTGTAGCATGGTAACAGATTCTGTGGTGCTTGGCTTTTTTGTTGAAAGTGAGAAAATACTATCAGCATTAAGCTCTGACC CAGCAGTTGCAGATTTCTTCTGGCAGGAAAGCGCTATTGTGCTAGCAAAACTCTTACTTCCACAAATATTTGAGAAAATGTCAATGCATGATTTGAGAGC TCTTATTGTTGAAAAGTCGACCATGACCACCTACATTAGGGGAGAAACCATAGAAATACCTACCCACTCCGTAGGGTTTCTTTTGGAAGGGTTTATAAAA TCTCATGGTTTCCAAGAAGAATTGATTACTTCACCGGCAGCTTTATTTCCACAATATGGAGCAGCTTTATTTCCACAATATGGGGACCAAAGTAGCAAGA CCTCTAGTTTTACTCATCAGGGGATGTGGTATCAAGTCGAGACGAGAGCAAGAGTGATCATATTCAAGACCGTATCATTTGAAGGGGAGGATGCCCTGAA GAGAAGGTCATCGTCTTTGGTGTCAGTTGATAATCATATGCACAGGCCCCCAAGTAGAGAGCACGGTGGACTCATGAGTTGGCCTGAAAGCTTTTACAAG CAGCAGAAGGAGAAAGACAACCACCAAACAACGGAAGAGCGGCCAGCCAACAGCTTATCGGCCAAAGCAATGCAGCTAAGCATGTTCGGCAGCATGGTTG ACGTCCATGGTGGTCGGGCGCAAAGTTCTTCGAGCAGTGAAGGGAAAGGAGCTCGTAACATGGGGAAAGCAGCATCGTTCCAAGGCTACCCGAGTGGCGA AGGGCCATCTTCGACTAGAGGAAGGAAGGTGGATGACGAAGGAGCCGCCATTGCTGCGGTGGAAAGTGGGGGCATCGGCACTGTGCAGAACTTGGAGGAG AGGAGTGAGAGCGAAGATGATGATGACGATGAGGATGTTATCATAAGAATCGACTCACCAAGTACGCTGTCCTTCCGTCAGGTTTCTGGAGCAAAGCAGT TAGGAGGAGGAGGAGAAGGCCGCGGCTTTGTATTCCAAGTTTGTCAGCCCACCACCGTCGCCTCGCCGGTCGCCGCCGCTAGTGTTGAGTGA
AA sequence Show only first row Show all	>Lus10039133 pacid=23150595 polypeptide=Lus10039133 locus=Lus10039133.g ID=Lus10039133.BGIv1.0 annot-version=v1.0 MASSISSSSSSIMDLDHIGFTVLVEEASPESSSNPTDAVIFFGLSLVLGIASRHVLRGTRVPYTVALLIIGIVLGSLEYGTSHKLGKIGDGIRLWASIDP DLLLAIFLPALLFESSFSMELHQIKRCMAQMLLLAGPGVLLSTFFLGSALKLIFPYSWNWKTSLLLGGLLSATDPVAVVALLKELGASKKLSTIIEGESL MNDGTAIVVYQLFYRMVLGHSYGGGAIIKFLTQVSLGAVGIGLAFGIASVLWLGFIFNDTVIEISLTLAVSYVAYFTGQEGAGVSGVLTVMTLGMFYAAV AKTAFKGDGQQSLHHFWEMIAYIANTLIFILSGVVIAEGVLSSDSIFHNHGHSWGYLVLLYVLVQLSRCIVVGVLFPFLRYFGYGLDWKEATILIWSGLR GAVALSLSLSVKASFLCEMSYNFISAFAREEQRLGRRTSDSSAFISPETGKLFVFFTGGIVFLTLIVNGSTTQFVLRLLDMGKLSATKKRVLEYTRYEML NRALEVFGDLGDDEELGPVDWPTVKRYIKTLSSLEGESVHPHEPSETGLDPTNLKDLRIRLLNGVQAAYWVMLEEGRITQGTANILMQSIDEAMDSAAHE PLSDWKGLKSNVNFPSHYKFLQTSYCPPKLVTYFTVERLESACYICASFLRGHRIARQQLHDFIGAWFPTRKMTKEHTVEIISILLLILVLSSEAFYYIL ADLICHYCVISSYAEILFYHALVGDSNIASIVISESEAEGEDARKFLEDVRVTFPQVLRVVKTRQVTYSVLNHLIEYVQNLEKTGLLEQKEMLHLHDSVQ TDLKRLLRNPPLVKIPKINDLINVHPLLGALPPAIREPLAGSSKEIMKLRGVPIYREGSNPTGVWFISNGVVKWTSKSMRSKYSLHPTFAHGSTLGLYEV LVRKPYICSMVTDSVVLGFFVESEKILSALSSDPAVADFFWQESAIVLAKLLLPQIFEKMSMHDLRALIVEKSTMTTYIRGETIEIPTHSVGFLLEGFIK SHGFQEELITSPAALFPQYGAALFPQYGDQSSKTSSFTHQGMWYQVETRARVIIFKTVSFEGEDALKRRSSSLVSVDNHMHRPPSREHGGLMSWPESFYK QQKEKDNHQTTEERPANSLSAKAMQLSMFGSMVDVHGGRAQSSSSSEGKGARNMGKAASFQGYPSGEGPSSTRGRKVDDEGAAIAAVESGGIGTVQNLEE RSESEDDDDDEDVIIRIDSPSTLSFRQVSGAKQLGGGGEGRGFVFQVCQPTTVASPVAAASVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10039133 [exp]	0	1
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10011445 [exp]	2.4	0.9209
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10014066 [exp]	6.5	0.9222
AT1G71740			unknown protein		Lus10029742 [exp]	9.7	0.9133
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10006827 [exp]	12.0	0.8910
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	14.1	0.9157
AT1G13590		ATPSK1	phytosulfokine 1 precursor (.1...		Lus10030572 [exp]	17.4	0.8587
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	17.7	0.9089
AT3G20015			Eukaryotic aspartyl protease f...		Lus10010157 [exp]	18.0	0.8970
AT5G36930			Disease resistance protein (TI...		Lus10006928 [exp]	18.0	0.9025
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10007100 [exp]	18.5	0.8431

Compare expression of checked genes

Lus10039133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.