Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26150 256 / 4e-83 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G22830 204 / 6e-62 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT4G17750 196 / 6e-58 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT3G51910 184 / 7e-56 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT5G16820 188 / 2e-55 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G63350 181 / 2e-54 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1) AT3G02990 184 / 6e-54 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT1G32330 182 / 7e-53 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT5G43840 161 / 5e-47 HSF AT-HSFA6A heat shock transcription factor A6A (.1) AT5G54070 159 / 8e-46 HSF AT-HSFA9 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A9, heat shock transcription factor A9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013797 [exp] 397 / 4e-138 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2) Lus10006618 [exp] 214 / 8e-66 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 212 / 2e-65 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000312 [exp] 198 / 4e-59 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 197 / 8e-59 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10030956 [exp] 196 / 2e-58 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 195 / 7e-58 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10022083 [exp] 192 / 2e-57 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10011941 [exp] 193 / 3e-57 AT2G26150 241 / 9e-76 heat shock transcription factor A2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G226800 [exp] 249 / 8e-80 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.005G214800 [exp] 207 / 1e-63 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 206 / 2e-63 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 205 / 6e-63 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 204 / 2e-62 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G148200 [exp] 207 / 3e-62 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2) Potri.001G138900 [exp] 202 / 3e-60 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 201 / 1e-59 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 182 / 1e-52 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.014G141400 [exp] 160 / 4e-45 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10039134 pacid=23150263 polypeptide=Lus10039134 locus=Lus10039134.g ID=Lus10039134.BGIv1.0 annot-version=v1.0 ATGGAGGGGGTTGTAGTGGTGAAAGATGAACAGTTCGATTCGGGCAGCAGCGACATGCCTTCCCCTGCATCTTCATCTTCGTCGTCCAGCTTCCGGCCGC AGCCGATGGAAAGACTGCACGAGGTGGGTCCTCCTCCGTTCCTGAGGAAGACTTATGAAATGGTGGAGGATCCTTCGACGGACGCTGTGGTTTCGTGGAG TGAAGCTAGGAACAGCTTCATTGTTTGGGATTCTCACAAATTCTCCACCACTCTGCTCCCTCGATACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGC CAGCTCAACACTTATGTAAGTAATTCCTCTATGAACCCAAGCCCTAGTTTGTCCTTACAGCGCTGCTGGTTACCATGGGTTGATTCAAATGTCGCCATGT TGGAAGGGTTCGGATCAGTCGAGCCTGGATTCAGGAAGGTGGATCCTGACAGATGGGAGTTCGGGAACGAAGGGTTTCTGGGAGGGCAGAGGCATTTGCT CAAGACCATCAGGAGAAGAAGACATCATTCATCGGCTGGAGGAGGAAATTCAAATTGCAGCAGCAAAGTTGCGGAATTGGGCACTAATTACAGCCAAAAT ATGGACGAAGAGATCGAGAAGCTAAAGAACGAACGGAACTCGCTGATGGCCGAGATCGTAAGGATCCGGCAGCAGCAGCATCACAGCAGAGATCAGATCG ACGCCATGGAGGACAGGCTGGTGAGAACCGAGAAGAAGCAGCATCAGATGCTGACGTTCCTAGCCAAAGCCATCAAGAACCCTGATTTCGTCCAACAATT GTCGCTCAGGAATAACGATGCTGCTGCAGCTGGGAGGAAAAGGAGACTGGTGAGCAGCATTTGTTCTGATAAGTTGACAGAGACGATTTCCTGCGTTGTG GATGATCATCATCATGCTGAAACGACGGCGGTTGATGCTGCTGCTGCTGAAACCATTTGGGAGGAGCTGGAGTTGTTTAATGATGACCAAAACAACGACG TCGGAGTTGTTGATGGTGGTGGTGGTGGTGGAGTGGAGGATTGGAGCGATGTGGATGTGCAGGATCTCGTTGATCAGATGGGCTTCCTGCGATCTGAGCC GTTAGATTGA
AA sequence Show only first row Show all	>Lus10039134 pacid=23150263 polypeptide=Lus10039134 locus=Lus10039134.g ID=Lus10039134.BGIv1.0 annot-version=v1.0 MEGVVVVKDEQFDSGSSDMPSPASSSSSSSFRPQPMERLHEVGPPPFLRKTYEMVEDPSTDAVVSWSEARNSFIVWDSHKFSTTLLPRYFKHNNFSSFVR QLNTYVSNSSMNPSPSLSLQRCWLPWVDSNVAMLEGFGSVEPGFRKVDPDRWEFGNEGFLGGQRHLLKTIRRRRHHSSAGGGNSNCSSKVAELGTNYSQN MDEEIEKLKNERNSLMAEIVRIRQQQHHSRDQIDAMEDRLVRTEKKQHQMLTFLAKAIKNPDFVQQLSLRNNDAAAAGRKRRLVSSICSDKLTETISCVV DDHHHAETTAVDAAAAETIWEELELFNDDQNNDVGVVDGGGGGGVEDWSDVDVQDLVDQMGFLRSEPLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10039134 [exp]	0	1
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10004039 [exp]	1.0	0.9479
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10000932 [exp]	2.4	0.8968
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	2.8	0.9426
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10041615 [exp]	3.2	0.8995
AT4G37860			SPT2 chromatin protein (.1)		Lus10007985 [exp]	6.3	0.7910
AT3G10020			unknown protein		Lus10002842 [exp]	7.5	0.8858
AT1G52560			HSP20-like chaperones superfam...		Lus10024225 [exp]	7.7	0.9386
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10011385 [exp]	8.1	0.8592
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10006444 [exp]	8.7	0.9172
AT5G02220			unknown protein		Lus10001570 [exp]	9.4	0.7781

Compare expression of checked genes

Lus10039134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.