Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51520 399 / 9e-140 diacylglycerol acyltransferase family (.1) AT3G26820 45 / 4e-05 Esterase/lipase/thioesterase family protein (.1) AT5G41130 44 / 0.0002 Esterase/lipase/thioesterase family protein (.1.2) AT5G41120 43 / 0.0002 Esterase/lipase/thioesterase family protein (.1) AT1G54570 42 / 0.0005 Esterase/lipase/thioesterase family protein (.1) AT3G26840 42 / 0.0005 Esterase/lipase/thioesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013796 [exp] 592 / 0 AT3G51520 424 / 2e-149 diacylglycerol acyltransferase family (.1) Lus10039136 [exp] 447 / 3e-158 AT3G51520 349 / 2e-120 diacylglycerol acyltransferase family (.1) Lus10018998 [exp] 45 / 6e-05 AT1G54570 824 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10033848 [exp] 45 / 7e-05 AT1G54570 770 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10041529 [exp] 43 / 0.0003 AT5G41130 647 / 0.0 Esterase/lipase/thioesterase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G145900 [exp] 426 / 2e-150 AT3G51520 394 / 4e-138 diacylglycerol acyltransferase family (.1) Potri.005G046700 [exp] 49 / 4e-06 AT1G54570 868 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G324200 [exp] 46 / 4e-05 AT5G41120 734 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033600 [exp] 46 / 4e-05 AT1G54570 830 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033300 [exp] 45 / 5e-05 AT1G54570 850 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.005G046600 [exp] 44 / 0.0002 AT1G54570 831 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.005G046800 [exp] 43 / 0.0002 AT1G54570 405 / 4e-137 Esterase/lipase/thioesterase family protein (.1) Potri.013G033000 [exp] 42 / 0.0007 AT1G54570 823 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G323800 [exp] 42 / 0.0008 AT5G41130 686 / 0.0 Esterase/lipase/thioesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF03982 [flax] [poplar] DAGAT Diacylglycerol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10039135 pacid=23150587 polypeptide=Lus10039135 locus=Lus10039135.g ID=Lus10039135.BGIv1.0 annot-version=v1.0 ATGATGGTACAGAAAGTAGAGGAGGAAAACCGGCTCGCCGGAGGAACTGCTTCTAATAGGTGGCAGGAGAATGTAAACGGTAATAGCATCAACGGCGGCG GAGTAGCTACGATTTTGAGATCCAGTGATGTCGTCTCTGGAAGCAAATTGAAGTCTTTATTGTCGCTTGGGATATGGCTGGGGGCTATCCATTTCAACGT CGCCTTAGGTGTTGTATCCTTCGTCTTCCTCCCTTTCTCCTATTTCCTGATGCTATTGGGATTTCTTTTGATGTTGATGTTCGTCCCAATCAACGATTCC AGCTACTTGGGCCGCCGATTCTGCAGATACGTTTGCAGACATGCGTGTAGTTACTTTCCGATCACTCTTCACGTCGAGGATATGAACGCCTTCCGTTCTG ATCGTTCTTACGTTTTCGGGTATGAGCCGCATTCTGTTCTTCCCATTGGCGTTGTTGCTCTATCGGATCATGTGGGTTTTCTACCTCTACCGAAAATTAA AGTTCTTGCTAGCACAGCTGTGTTCTACACCCCTTTCCTTAGACATATATGGACGTGGTGTGGTCTTGCCCCGGCAACCAAGAAGAATTTTACGTCTCTC TTGGCATCCGGTTATAGTTGCATTGTGGTTCCTGGTGGCGTTCAAGAAGCATTTCACATGGAACATGGAGCAGAGGTCGCTTTCCTGAACAAGCGAAAAG GATTCGTTCGGTTAGCCATAGAGATGGGTAGCCCCTTGGTTCCAGTTTTCTCCTTCGGTCAGTCAGATGTGTACAAGTGGTGGAAACCTAGGGGAAAGTG GTTCTTGGCATTTGCGAGAGCTATAAGGTTCACCCCTATTATCTTTTGGGGTATACTCGGAACTCCATTGCCATTCCAGCAACCGATGCATGTTGTGATT GGCCGACCCATCGAATTTAAGAAAAACGCACAGCCTAGCATGGAAGAGGTGGCTGAAGTTCATGGGAAGTTTGTTGCAGCACTGAAAGACCTCTTTGATA GGCACAAAGTGGAGGCTGGTTGTGCTGATCTTCAACTCAAAATTCTTTGA
AA sequence Show only first row Show all	>Lus10039135 pacid=23150587 polypeptide=Lus10039135 locus=Lus10039135.g ID=Lus10039135.BGIv1.0 annot-version=v1.0 MMVQKVEEENRLAGGTASNRWQENVNGNSINGGGVATILRSSDVVSGSKLKSLLSLGIWLGAIHFNVALGVVSFVFLPFSYFLMLLGFLLMLMFVPINDS SYLGRRFCRYVCRHACSYFPITLHVEDMNAFRSDRSYVFGYEPHSVLPIGVVALSDHVGFLPLPKIKVLASTAVFYTPFLRHIWTWCGLAPATKKNFTSL LASGYSCIVVPGGVQEAFHMEHGAEVAFLNKRKGFVRLAIEMGSPLVPVFSFGQSDVYKWWKPRGKWFLAFARAIRFTPIIFWGILGTPLPFQQPMHVVI GRPIEFKKNAQPSMEEVAEVHGKFVAALKDLFDRHKVEAGCADLQLKIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	0	1
AT4G35030			Protein kinase superfamily pro...		Lus10013566 [exp]	3.2	0.9568
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	3.2	0.9584
AT5G23160			unknown protein		Lus10017395 [exp]	3.6	0.9594
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10006982 [exp]	6.0	0.9567
					Lus10018014 [exp]	6.1	0.9410
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	6.9	0.9572
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	6.9	0.9580
AT3G56200			Transmembrane amino acid trans...		Lus10042864 [exp]	7.5	0.9514
AT5G23160			unknown protein		Lus10010194 [exp]	7.7	0.9520
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	8.8	0.9544

Compare expression of checked genes

Lus10039135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.