Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14570 508 / 7e-179 UBX domain-containing protein (.1.2.3.4) AT4G14250 256 / 2e-77 structural constituent of ribosome (.1.2) AT1G59550 154 / 3e-43 UBX domain-containing protein (.1) AT3G23605 99 / 2e-24 Ubiquitin-like superfamily protein (.1) AT4G11740 45 / 9e-05 SAY1 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013795 [exp] 834 / 0 AT1G14570 521 / 0.0 UBX domain-containing protein (.1.2.3.4) Lus10029591 [exp] 44 / 0.0002 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10006321 [exp] 43 / 0.0005 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1) Lus10041365 [exp] 42 / 0.0008 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098800 [exp] 603 / 0 AT1G14570 554 / 0.0 UBX domain-containing protein (.1.2.3.4) Potri.008G142800 [exp] 602 / 0 AT1G14570 541 / 0.0 UBX domain-containing protein (.1.2.3.4) Potri.001G109500 [exp] 44 / 0.0003 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10039137 pacid=23150643 polypeptide=Lus10039137 locus=Lus10039137.g ID=Lus10039137.BGIv1.0 annot-version=v1.0 ATGGAGCAAATGCTATCCGCAAGCGAGAAGGAGAGCATGGTCTCTTCCTTTCTCGAGATCGCCGTCGGCCAAACTGCTGACACTGCCAGACAGTTCTTGC AGGCCACTAATTGGAAGCTTGATGAGGCTCTTCAACTCTTCTACGTTGGCAATGAAGGACAAGCAGCACCTGCTTCACATTCGCCTCCTAGGGGTGATCT ATGGCCTACTGAAACTCCTGGGAATGAAACGATTGGGCAAGATGTGGTCGATGAAGTGCGCCCTCCATTACCTGTTTTGAGGGATACTCTCTATGATGAT GCTATGTTGCGTGGTGCATCAAGGGTAGTACACTCTTCTCGGGAACCCAGCTCACTGATTGCATTCCGCAACTTTCAAGAGGAAACAATGCATCCTGGGG TCTGGGAATCGGAACAAGGCTCTACATCAGCAAATAACCCTCGCGACCTTGCTTCCTTGTATAGGCCTCCTTTTCATTTAATGTTCCAGGGGTCATTTGA AAAGGCAAAAGCAGCTGCATCTGTTCAGGACAAATGGCTTCTCATCAATCTGCAATCCACTAAGGAGTTCAACTCCCATATGCTCAATCGGGATACGTGG GCCAATGAAGCTGTCTCTCAAACTATCAGCACCAACTTCATATTCTGGCAGGTGTACGATGATACCAGTGAAGGTCAGAAAGTCTGTACATATTACAGAC TAGATTCCATACCAGTGGTCCTGGTCATTGATCCAATCACTGGACAAAAGATGCGCTTGTGGTGTGGTATGGTACAACCGGAATGTCTACTTGAGGATCT AGTTCCATACATGGATGGTGGTCCTAGTGACCACCACAAAACTCTGTCTAACAAACGCCCAAGGGGAGGGTCTCTGACTTCACTTAGAAACCAAGATGAA CCCAAGGAAGAAGTTCAGGAAGTGGTTCAAGCTGTTTCTGCTCCTTTGGAGACAACGATTGACTCAACTGTGGCGGTTCCGGATCATAAAAGTACCACCG ACACCAAGAAGGACGAAGAAACGGGTCCTTCAAGGAAAACTCAGTATCCACCATTACCTGAAGAACCCAAGGGCGATAGGAGTGTCTTGTGTAAGGTTGG ACTTAGGTTTCCTGATGGACGTAGGGTGCAGAGAAATTTCCTGAAAACCGACCCAGTACAATTGCTGTGGTCATTCTGCTGTTCGGAGGTGAAGGAAGCT GAGACGAGACCGTTTCGCCTGACACAGGCGATTCCAGGAGCTAAGACTCTGGATTCGGGCAGTAGCATCACATTTGGGGAATCAGGGCTGGAGAACTCTA TGATCCTGCTAGCTTGGGAATGA
AA sequence Show only first row Show all	>Lus10039137 pacid=23150643 polypeptide=Lus10039137 locus=Lus10039137.g ID=Lus10039137.BGIv1.0 annot-version=v1.0 MEQMLSASEKESMVSSFLEIAVGQTADTARQFLQATNWKLDEALQLFYVGNEGQAAPASHSPPRGDLWPTETPGNETIGQDVVDEVRPPLPVLRDTLYDD AMLRGASRVVHSSREPSSLIAFRNFQEETMHPGVWESEQGSTSANNPRDLASLYRPPFHLMFQGSFEKAKAAASVQDKWLLINLQSTKEFNSHMLNRDTW ANEAVSQTISTNFIFWQVYDDTSEGQKVCTYYRLDSIPVVLVIDPITGQKMRLWCGMVQPECLLEDLVPYMDGGPSDHHKTLSNKRPRGGSLTSLRNQDE PKEEVQEVVQAVSAPLETTIDSTVAVPDHKSTTDTKKDEETGPSRKTQYPPLPEEPKGDRSVLCKVGLRFPDGRRVQRNFLKTDPVQLLWSFCCSEVKEA ETRPFRLTQAIPGAKTLDSGSSITFGESGLENSMILLAWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14570			UBX domain-containing protein ...		Lus10039137 [exp]	0	1
AT5G41770			crooked neck protein, putative...		Lus10034294 [exp]	1.0	0.8387
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10028371 [exp]	4.2	0.7964
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10025869 [exp]	6.5	0.8050
AT2G37440			DNAse I-like superfamily prote...		Lus10024427 [exp]	9.4	0.7590
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10030688 [exp]	11.5	0.8024
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10005669 [exp]	18.5	0.7341
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	19.1	0.7990
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037987 [exp]	21.5	0.7954
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	22.7	0.6991
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	23.7	0.8249

Compare expression of checked genes

Lus10039137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.