Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 555 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 483 / 4e-157 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 421 / 1e-133 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT5G41610 371 / 4e-115 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT3G17630 366 / 3e-113 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT4G23700 352 / 7e-108 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G53720 352 / 2e-107 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G64170 323 / 3e-97 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT1G06970 300 / 3e-88 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 269 / 3e-77 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013794 [exp] 850 / 0 AT2G13620 332 / 1e-102 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 529 / 9e-175 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 525 / 1e-172 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 428 / 6e-136 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10004932 [exp] 383 / 6e-119 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10015268 [exp] 383 / 3e-118 AT2G13620 507 / 1e-166 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 374 / 9e-116 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10040881 [exp] 374 / 2e-115 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10025322 [exp] 311 / 8e-93 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189100 [exp] 557 / 0 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 536 / 2e-177 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.007G105200 [exp] 521 / 5e-172 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G102700 [exp] 512 / 5e-169 AT2G13620 525 / 3e-175 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 468 / 1e-151 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 397 / 5e-125 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 397 / 5e-125 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 367 / 2e-113 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 359 / 2e-110 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 359 / 3e-110 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10039138 pacid=23150279 polypeptide=Lus10039138 locus=Lus10039138.g ID=Lus10039138.BGIv1.0 annot-version=v1.0 ATGGCGAATAATACGTGGGAAAAAAGCCATAAGAACATAACGTTGGGAAAAGATGCAGGACTTATCCTCGAAGGAATGTCTAGTGGGGTGGTTAACCTAT GTCACATGGAAGCCGTTCCAACTAACCTCAACAATTCCGTCTTCTGGAAACTCGCCAAACCCAAAAACGAACACGACCCTTCCTTCGTCTATTACGTCCC GTATTACTTCATCCAATTAACCCTCATCCTCTTCGCCATTCACCTCTTCGCCCTCATCCTCAAGCCCTTACGCCTTCCTCGCTTTTCCGTCGAACTCTTC GCAGGGGTAGTTGTGGGTCCCAGCGTATTGGGATTACGGGATTGGTATTCAATCTACATACTTCCTCCAAGCAGCCTGAAGGTGCTGGACACGCTGGGAC ACCTCAGCCTGATTTATTATGTATTCCTAGTCGGGTTAGAGATAGACCTATCCGCGATTAGACACGTAGGACGACAGGCGGTCTACACAGGTTTGACCGG AGCGATCCTCCCTCTCATCGTCGGCTTCATCCAATTCTTCATAGTGGCGGCCGACCCAAACTACCCAGACTTCTTCACCTCGGAATACTGGCAACACCTG GTCAACGTCAGGATCACCGGCGCCGTCTTCTGGGGGGTGGCATTGACCGTTACAAGCTTCCCGGACTTAGCGAGGATACTCTCCGACATCAAGCTCCTCC ACACGGACATCGGACGTCTAGCGCTGTCGTCGTCAATTGTCAGCGAGATGACGTCATGGATACTTTTGGTCATCGGGTTAACGTTGACTAACGGCACGCT GAACCCGTTGTTCCTCCTCCCGATGGCCACCTTCCTGGCCGCGTCGTGGTTCTTAGTCCGTCCCGCGGTGACGTGCCTGCTGAGGCACGCTGACGAGGCG GACAACACCGTGCTGCTTAACTTTGTTGTGTTTGGAGGGATCATGTCGTCGTCGATTATTACGGACGCGTGCGGGGCGAACTCGATGATCGGGGCGTTCG TGTTCGGGCTGGTGATACCGACCGGGGAGGTGGCGGCGAAGATTATGGAGAAGCTTGAGGATTACGTTAAGGGGGTTATGATCCCGGCGTTCTTTTTGGT CAACGGGGTTAGGACGAACTTGCCTGCGCTTTTCAACCCGGATTACGGAAGGCCCATTTATGTTGTGGTTCCTCTCATTGCTATGGCCTGGTCGGCGAAG ATCGCGGGGACTTTTGTCTTCTCCAAACTTGCTGGGATGACTACTCGTGAAGCTTTCACTCTTGGTGTTCTTATGAACACCAAAGGTGTTCTTGCTTTGA TCGTCATCAACACCGGCCGCAACATCCAGGGCTTCAACCACCCAATGTTCGCCATACTGATACTCTCCATACTAGTAATGTCAGTAACGGTAATCCCATT AGCCAAAGCAGCAAACAAATCCAACAGGAGAACCGGCCAGTTCAAGCATCGAACGGTCGAGAGCAACAAGCTGGAATCCGAGCTCAGGATCCTAACGTGC ATCCACTCGCCGCGCAACCTCTCCGGAATGATCAACCTCCTGGAATCTTCCAACGCAAGCAAGCAGTACCCCATCTGCGTCTTCGCCCTCCACCTAGTCC AGCTCACCGAGCGACGCGCCACCGCCATGCTCATCATCCACGACAGCTCCTCCGCCTCGAACAGCAGCATATTCGACGGCAGCTCGGGCCAGAACATGAG CCGCCGCGAAGAAGACTCGAAACACATCATCACGGCGTTCGAGAGCCTCGAGACTCGCGGCCCTTCCGTGTCGGCCCAGTCGCTCACGGTCGTGTCGCCT TACACGACCATGCACGAGGACATCAGCTGCTTGGGGGAGGACAAGCGCGTGACGTTGATCCTCGTGCCGTTTCATAAACAGGCTGACGTGTACGGGAGGC TGCAGGATGAGAATCTGAATTGGAGGACGGTCAACAAGAATCTCCTCGCAACGGCTACTTGCTCCGTGGGTATACTCGTTGACCGTGGGCTCGGATCTAA TAAGGACAGGTCCACGGTACAATCCGTGCAGCAGCAGCAATCTCAGCCGTTAGCGTTGTCAACTTATGCTGTTATATTCATTGGTGGGCCCGATGACCGA GAGGCCCTGGCATTTGGATGGAGGATGGCGAAGTCTCCCAGCGTAAACTTTACTGTCCTCCGTCTCATTTCTGATCACGAAGATGATCAAGAAGATGAGG ATGATAATCAGGCAGAAGTAGCGTCGATAAAAGGATCGGAACAAGGAGGAGGGGCGAATTCGACAACCACGATGCCGATGAGGAGTAAAAAGGAAGAGAG AGAGATAGACGACGAGTACATGAACGAGTTTAGGTTCCGGACAATGCACGAGGAGAGTATAAATTACATGGAGAAGGTAGTGAAGACTGGGGACGAGGTG ATCAGGGCGATAGGGAGGGCGGTCCCCAGGTGTGACTTGTACATATTGGGGCAGAGGAAGGACGCGGCATCGTCGGTGATGTTGGGGCTGTCGGAGTGGA CGGAGTGCGAGGAGTTGGGTGTCTTGGGAGACACGTTACTGGCGTCGGAATTTGCGGAGCATTCTTCGTTCTTGGTAATCAAGCAACATTATGTTCCCGG GATGCGGGTGCGGGTGCACCACGGCGGGAACAGTAATAATAATAGCAGGGTGATGCTTGATAATGCCCATACGAGTAATGTTGGCCGTGATGGCGGCGGC GATCACATGCCGCCGTGGCAACACTCTAATCCTAAAAGTCCCTTCTCTACTTCCCAAATTATTTAA
AA sequence Show only first row Show all	>Lus10039138 pacid=23150279 polypeptide=Lus10039138 locus=Lus10039138.g ID=Lus10039138.BGIv1.0 annot-version=v1.0 MANNTWEKSHKNITLGKDAGLILEGMSSGVVNLCHMEAVPTNLNNSVFWKLAKPKNEHDPSFVYYVPYYFIQLTLILFAIHLFALILKPLRLPRFSVELF AGVVVGPSVLGLRDWYSIYILPPSSLKVLDTLGHLSLIYYVFLVGLEIDLSAIRHVGRQAVYTGLTGAILPLIVGFIQFFIVAADPNYPDFFTSEYWQHL VNVRITGAVFWGVALTVTSFPDLARILSDIKLLHTDIGRLALSSSIVSEMTSWILLVIGLTLTNGTLNPLFLLPMATFLAASWFLVRPAVTCLLRHADEA DNTVLLNFVVFGGIMSSSIITDACGANSMIGAFVFGLVIPTGEVAAKIMEKLEDYVKGVMIPAFFLVNGVRTNLPALFNPDYGRPIYVVVPLIAMAWSAK IAGTFVFSKLAGMTTREAFTLGVLMNTKGVLALIVINTGRNIQGFNHPMFAILILSILVMSVTVIPLAKAANKSNRRTGQFKHRTVESNKLESELRILTC IHSPRNLSGMINLLESSNASKQYPICVFALHLVQLTERRATAMLIIHDSSSASNSSIFDGSSGQNMSRREEDSKHIITAFESLETRGPSVSAQSLTVVSP YTTMHEDISCLGEDKRVTLILVPFHKQADVYGRLQDENLNWRTVNKNLLATATCSVGILVDRGLGSNKDRSTVQSVQQQQSQPLALSTYAVIFIGGPDDR EALAFGWRMAKSPSVNFTVLRLISDHEDDQEDEDDNQAEVASIKGSEQGGGANSTTTMPMRSKKEEREIDDEYMNEFRFRTMHEESINYMEKVVKTGDEV IRAIGRAVPRCDLYILGQRKDAASSVMLGLSEWTECEELGVLGDTLLASEFAEHSSFLVIKQHYVPGMRVRVHHGGNSNNNSRVMLDNAHTSNVGRDGGG DHMPPWQHSNPKSPFSTSQII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10039138 [exp]	0	1
					Lus10000351 [exp]	4.0	0.9544
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10023106 [exp]	4.1	0.9252
					Lus10002886 [exp]	5.7	0.9544
AT1G62660			Glycosyl hydrolases family 32 ...		Lus10030278 [exp]	6.2	0.8951
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035644 [exp]	6.3	0.8879
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	6.9	0.9544
					Lus10014748 [exp]	8.0	0.9544
AT3G26880			Plant self-incompatibility pro...		Lus10022631 [exp]	8.9	0.9544
					Lus10024825 [exp]	9.5	0.7348
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10022782 [exp]	9.8	0.9544

Compare expression of checked genes

Lus10039138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.