Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01990 118 / 2e-31 unknown protein AT1G14630 117 / 5e-31 unknown protein AT5G48720 68 / 7e-13 XRI1, XRI x-ray induced transcript 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013793 [exp] 378 / 2e-131 AT2G01990 118 / 1e-31 unknown protein Lus10038181 [exp] 60 / 6e-10 AT5G48720 253 / 4e-83 x-ray induced transcript 1 (.1.2) Lus10025920 [exp] 58 / 2e-09 AT5G48720 237 / 2e-77 x-ray induced transcript 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G140900 [exp] 129 / 2e-34 AT2G01990 148 / 3e-43 unknown protein Potri.010G100700 [exp] 127 / 2e-34 AT1G14630 166 / 1e-50 unknown protein Potri.014G190000 [exp] 69 / 4e-13 AT5G48720 226 / 2e-73 x-ray induced transcript 1 (.1.2) Potri.002G244000 [exp] 67 / 2e-12 AT5G48720 281 / 2e-94 x-ray induced transcript 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039139 pacid=23150399 polypeptide=Lus10039139 locus=Lus10039139.g ID=Lus10039139.BGIv1.0 annot-version=v1.0 ATGATGGGTGAGGTTGTTCCCTGGGAGTGGGAGTCAGTGCTGTTCGGTTCTTCTTCTTCTTCTTCTTCTTCTACTACTGCACCCAGCTGTTTCGATCTTC CCAACAACAACAACAACCTCCTCGGGTTCCGCAATTCATCAGACTTTTTGTCGTCTCTGCCGCAGCACCACTACTCGATGGAGGATGAGAGGAATTACTT CACGTCATCGCTGGATCGGCTGGAATTCCCAACTGGGTATTTGGAAGATGCTCTGCTCGAGCTCTGCCACCCAGCTGCTGCTTCTGCCTCCAAACGGCGG CGTTACGAGAATTCGGCGCAGAATTTCCATGCTTTAGCTACTGCCGCCGCCGCAACGGCGTCGTATGGTGGTAGTGGTGGACTATTGTTTTCTAGTCAAC GGCAGGAAATGACGATCTCATCCCCACCTGAAATGATCGACTATTATAATATTCCGTCGTCTTCTTCTTCCCATTTATATAACAGATCGGTATCGCCCGT TTCTTCTGACTATACCAACCCGGTCTCCGTCGTGGTCGACGACGAAGTCAGAGATCACTCCGGCAGCAGCAGCAATTCAGCGCTGGCGAGTAGCGACCAA CTTCCGCATTCCTCCTGGCCGAAGAGGGAGATAGATGTCAAAGAGGAGGATACCGACGGTAACGAGGAAAAGGAAAGAAAGCAGAGGACGAAAATTATGA AGAAAACAGGCGGCGACGGAGGAGAAGAACGGCAGGGGAGGAGAAGGAAGAGAGAGGATCGAGTAACATATCCGTTTACGCTGGTGAAGCCGGGAGGAAG AGAAGGAGAAGTGACGATAGAAGAAATAAATAAGAGGATACTAATGACACCAACGAGACCGGTGAGACATCCGGTGGGGAAGTATGCTTGTAGGCCATGT GTGTCGTCCACGTCGTCGGCGGCGGTTGCCGGACTATCGGGGAAAGCGGTGGTTGCGCTGACCAGGATCTATACCCAAGGTGGCAAAGGGACTGTCACTA TTATTAGGACCAAGGGTTGA
AA sequence Show only first row Show all	>Lus10039139 pacid=23150399 polypeptide=Lus10039139 locus=Lus10039139.g ID=Lus10039139.BGIv1.0 annot-version=v1.0 MMGEVVPWEWESVLFGSSSSSSSSTTAPSCFDLPNNNNNLLGFRNSSDFLSSLPQHHYSMEDERNYFTSSLDRLEFPTGYLEDALLELCHPAAASASKRR RYENSAQNFHALATAAAATASYGGSGGLLFSSQRQEMTISSPPEMIDYYNIPSSSSSHLYNRSVSPVSSDYTNPVSVVVDDEVRDHSGSSSNSALASSDQ LPHSSWPKREIDVKEEDTDGNEEKERKQRTKIMKKTGGDGGEERQGRRRKREDRVTYPFTLVKPGGREGEVTIEEINKRILMTPTRPVRHPVGKYACRPC VSSTSSAAVAGLSGKAVVALTRIYTQGGKGTVTIIRTKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14630			unknown protein		Lus10039139 [exp]	0	1
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	2.4	0.9178
AT3G25130			unknown protein		Lus10025905 [exp]	3.5	0.8817
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007655 [exp]	3.9	0.8948
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	4.5	0.9058
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10002181 [exp]	6.0	0.8894
AT5G17850			Sodium/calcium exchanger famil...		Lus10013634 [exp]	6.0	0.8794
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	7.4	0.8777
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10011502 [exp]	11.8	0.8804
					Lus10020006 [exp]	12.8	0.8893
AT1G47410			unknown protein		Lus10006481 [exp]	15.2	0.8795

Compare expression of checked genes

Lus10039139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.