Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02090 1066 / 0 CHA19, ETL1, CHR19 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT3G06010 297 / 7e-87 ATCHR12 Homeotic gene regulator (.1) AT5G19310 292 / 4e-85 Homeotic gene regulator (.1) AT2G13370 294 / 2e-84 CHR5 chromatin remodeling 5 (.1) AT4G31900 275 / 1e-78 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT2G25170 271 / 1e-76 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT2G28290 267 / 2e-75 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G44800 263 / 9e-74 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT2G44980 251 / 1e-71 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT2G46020 231 / 2e-63 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013792 [exp] 1355 / 0 AT2G02090 1034 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10009711 [exp] 297 / 1e-85 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10022423 [exp] 297 / 2e-85 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10010522 [exp] 290 / 2e-84 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10034064 [exp] 290 / 2e-84 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10041735 [exp] 285 / 3e-84 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10024019 [exp] 276 / 6e-81 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10005339 [exp] 278 / 5e-79 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 277 / 9e-79 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G099000 [exp] 1118 / 0 AT2G02090 1061 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.008G149900 [exp] 291 / 1e-84 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.009G047800 [exp] 294 / 2e-84 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.001G253400 [exp] 293 / 3e-84 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.010G091200 [exp] 286 / 8e-83 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.019G129900 [exp] 279 / 2e-82 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 275 / 7e-81 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.001G123400 [exp] 281 / 6e-80 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.003G110100 [exp] 279 / 3e-79 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.006G262200 [exp] 274 / 1e-77 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039140 pacid=23150405 polypeptide=Lus10039140 locus=Lus10039140.g ID=Lus10039140.BGIv1.0 annot-version=v1.0 ATGAAGCGTGATTTTGATGAAATCTCCGACGACGAATGGGATAATCACGCCTTCAATCCCTCTCGCATCCTCAAACCAGCTCCCTCTTCCTCCTCCAAAT CCCCATCCGACTACATCCACCACCACCGCCCACCTCCGCCAATAGAGTCATTCTCTTTCCGCACCAAATCCTCCCCCGGGGGACCGCTGCTTGTTGTTGA TAGTCCCAGCAACAGTAACAGTAGCGACGACTGTGTCATAGTCACCGCCGGAGCTAAGGATTCTTCGCAGCCTGTGGAGTTGGAGGATGACGACTTCGAC GATCGTGACAACAGACCCGTTGGAAATCGGGGTCGTCGGTTTATCATTGATGATGATGACGATGAGGAGGAGGGACAAGCTTCTGCGGCAGAGATAGGTC GTGACGAGAATCGAGATATTATGGAGGTTTACGAAGTCAAGTCTTCTAGTGACGGTGAGGACTTGGAACTTGAGCTTGAGGATGATGACGTGGTTGGGAA AGCTCTGCAGAAATGTGCTAAAATATCGGCCGAGCTGAGAAAAGACCTGTATGGATCTACAGGAGCGTCGCGTGATCGTTATGCAGAGGTCGAAGCTTCT GCGGTCAGGATCGTGACGCAGACAGACATTGATGCCGCTTGTATGGTGGAGGTTCCAGATTTCCAGCCTGTCCTCAAACCATATCAACTGGTTGGCGTGA ACTTTCTTCTTCTTTTGTATAGAAAAAATATTGGTGGAGCAATATTGGCTGATGAGATGGGTCTTGGGAAGACTATTCAGGCTATAACATATTTGATGTT GCTGAAGCATTTAAATGATGATCCTGGTCCACATTTAATTGTGTGCCCGGCCTCTCTCCTGGAAAACTGGGAAAGAGAACTTAAAAAGTGGTGTCCATCT TTCTCTGTACTCCAGTATCATGGGGCTACAAGATCAGCCTACTCGAAAGAATTGAGCCACCTTGCCAAAAAGGGTCTGCCACCACCATTTAATGTGCTTC TCGTGTGCTACTCTCTTTTTGAAAGACACAGTGTGCAGCAGAAAGATGACCGTAAACTTCTTAAACGCTGGCGCTGGAGCTGTGTTCTTATGGATGAGGC GCATTCTCTTAAAGATAAGAACAGCTATAGGTGGAAGAATTTGATGAATATTGCAAAGAATGCAAACCAGCGACTGTTGCTAACAGGAACACCTCTGCAG AATGATTTACATGAGCTATGGTCCTTGTTGGAGTTTATGTTGCCTGATCTCTTCGCTACTGGGGATGTTGATTTAAAAAAGCTATTGAATGCAGAAGATG GAGATTTAATTGGCCGCATGAAGTCCATCTTAGGGCCATTCATTTTGAGGAGGTTAAAGTCAGATGTAATGCAGCAACTTGTGCCTAAGATACAGAGGGT TGAATATGTTTCAATGGAGAAACAACAGGAAAATGCTTACAAAGAAGCAATAGAAGAATATCGTACATACTCACAGGCCCGTATTGCAAAATGTTCCAAT GTTGACTTGACAACTGTAATTAAGGCTCTTCCTAGACGGCAGATATCAAATTACTTTGTTCAGTTCAGAAAGATTGCGAATCATCCATTATTGGTGAGAA GAATTTACACAAATGAGGACGTTGCACGTTTTGCTAAGAAGTTACATCCAAAGGGCGTTTTTGGCCTTGAATGTACCTTGGATAGAGTAGTTGACGAAAT TAAGAGCTACAATGATTATACTATTCATCAGATGCTACGTTCTTATAGTGTTATTGATTCAAAAGGAATCCTTTCAGACAAGCATGTCATGCTTTCTGCA AAATGTCGAGTATTGTCTGAGCTTCTTCCTTCACTTCACGAAGGCGGGCATCGAGTTCTAATCTTTAGTCAATGGACTTCAATGTTAGACATCTTAGAGT GGACCTTGGATGTAATTGGGGTAACCTATAGAAGACTTGATGGAAGTACGCAGGTGACTGATAGACAAACAATAGTGGATAATTTTAACAACGACAAGTC CATATTTGCGTGCTTGCTTTCTACCAGAGCTGGAGGGCAAGGTTTGAACTTGACCGGAGCCGATACAGTTATCATACACGACATGGATTTCAACCCACAG ATCGATAGGCAGGCAGAGGATCGATGCCATCGGATAGGCCAGACAAAGCCAGTAACCATTTACAGGCTGGTGACAAAGGGCACGGTGGATGAGAACGTAT ACGAGATTGCTAAAAGGAAACTGACTTTAGACGCTGCTGTTCTGGAGACTGGGGTCGACGTAGATAACCAGGGGGACACGTCCGAGATGACAATGGGGGA GATATTATCTTCGCTTCTAATGTCATAA
AA sequence Show only first row Show all	>Lus10039140 pacid=23150405 polypeptide=Lus10039140 locus=Lus10039140.g ID=Lus10039140.BGIv1.0 annot-version=v1.0 MKRDFDEISDDEWDNHAFNPSRILKPAPSSSSKSPSDYIHHHRPPPPIESFSFRTKSSPGGPLLVVDSPSNSNSSDDCVIVTAGAKDSSQPVELEDDDFD DRDNRPVGNRGRRFIIDDDDDEEEGQASAAEIGRDENRDIMEVYEVKSSSDGEDLELELEDDDVVGKALQKCAKISAELRKDLYGSTGASRDRYAEVEAS AVRIVTQTDIDAACMVEVPDFQPVLKPYQLVGVNFLLLLYRKNIGGAILADEMGLGKTIQAITYLMLLKHLNDDPGPHLIVCPASLLENWERELKKWCPS FSVLQYHGATRSAYSKELSHLAKKGLPPPFNVLLVCYSLFERHSVQQKDDRKLLKRWRWSCVLMDEAHSLKDKNSYRWKNLMNIAKNANQRLLLTGTPLQ NDLHELWSLLEFMLPDLFATGDVDLKKLLNAEDGDLIGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVSMEKQQENAYKEAIEEYRTYSQARIAKCSN VDLTTVIKALPRRQISNYFVQFRKIANHPLLVRRIYTNEDVARFAKKLHPKGVFGLECTLDRVVDEIKSYNDYTIHQMLRSYSVIDSKGILSDKHVMLSA KCRVLSELLPSLHEGGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDNFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQ IDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLTLDAAVLETGVDVDNQGDTSEMTMGEILSSLLMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02090		CHA19, ETL1, CH...	CHROMATIN REMODELING 19, SNF2 ...		Lus10039140 [exp]	0	1
AT5G49960			unknown protein		Lus10036585 [exp]	4.7	0.8655
AT5G49960			unknown protein		Lus10035805 [exp]	11.3	0.8739
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10015635 [exp]	21.5	0.7791
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	23.6	0.8525
AT4G27870			Vacuolar iron transporter (VIT...		Lus10011838 [exp]	26.3	0.8487
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	28.3	0.8538
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	28.7	0.8553
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	31.3	0.8515
AT5G59790			Domain of unknown function (DU...		Lus10040860 [exp]	31.5	0.8050
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10004876 [exp]	37.2	0.8532

Compare expression of checked genes

Lus10039140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.