Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) AT3G50310 164 / 3e-48 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT3G45790 164 / 7e-48 Protein kinase superfamily protein (.1) AT4G36950 162 / 2e-47 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT5G67080 161 / 4e-47 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT5G55090 155 / 4e-44 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT2G42550 152 / 8e-44 Protein kinase superfamily protein (.1) AT2G41930 152 / 1e-43 Protein kinase superfamily protein (.1) AT4G26890 153 / 5e-43 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT3G45670 147 / 2e-41 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034288 [exp] 279 / 2e-93 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034242 [exp] 278 / 3e-93 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 267 / 7e-89 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10026894 [exp] 262 / 3e-87 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10017114 [exp] 247 / 5e-81 AT3G50310 127 / 3e-34 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029023 [exp] 190 / 8e-60 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10012668 [exp] 172 / 4e-51 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034246 [exp] 158 / 2e-47 AT4G36950 107 / 7e-28 mitogen-activated protein kinase kinase kinase 21 (.1) Lus10034216 [exp] 145 / 4e-43 AT5G27510 107 / 2e-28 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131100 [exp] 198 / 6e-62 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.003G184200 [exp] 192 / 1e-58 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.001G042400 [exp] 189 / 2e-57 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.005G139300 [exp] 177 / 5e-53 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.007G044800 [exp] 172 / 4e-51 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 169 / 6e-50 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.004G171500 [exp] 161 / 2e-47 AT3G50310 202 / 7e-63 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.006G181000 [exp] 160 / 1e-46 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.004G007700 [exp] 150 / 4e-42 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.011G007400 [exp] 144 / 2e-39 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10039141 pacid=23150306 polypeptide=Lus10039141 locus=Lus10039141.g ID=Lus10039141.BGIv1.0 annot-version=v1.0 ATGGAGTGGAAACGAGGAAGACTTCTGGGCAAGGGCAGCTACGGCGAAGTGTTCTTAGCCGTCCCAGAAAACCCAATTCATTCAGTAATGGCAGTCAAAT CAGCACCCCTCGACAAATCCTCTTCTCTCCAAACCGAGCACCAAATCCTCGAACTCTTCCGCGGCGAACCAGGAATCGTCCAGAGCTTCGGCACTAGTGT CTCTCATCCAGACGGACGCAACACCACCACAAAAAAATTGAACTTGTTCCTCGAGTACGCCAACTGTGGCTCCCTCTCCAATTTGATCAAAGGAGGACTC CCGGAGGTGTACGTGAAAGACTGCACCCGATCGCTGCTCCAATCGCTAGCTGTCATCCATTCGAAGGGAATAGTCCACTGCGACATCAAACCCGACAACA TCCTAGCCTTCCGCGACCGAAACTACCCGGGTCTCTACCGTTTGAAGATTGCTGATTTTGGGTTGGCAGTGGAGAGGCGCATGCTGCATCCGAGGAGCAA GAATTACCGTGGGACGCTTAGGTACATGCCGCTTGAAGTTGTTGTTTTGGGGATTGTTTCGCCGGCGATGGATGTTTGGGCTTTGGGGTGTACTGTGGTT GAGATGCTGACTGGGGAGGCTCCGTGGAGTAGCTGTAATGACCAAAACCAAGTGTCGGCGGAGATTCGAAAGGGAAAGCGTCCGGCGATACCGGAGTGGA TATCCGAAGAAGGGAAGGATTTTCTTCAACAGTGTTTCTTCGGGGCTTCGTACGAGCGGGTCTCTGCTGAGTGGCTTCTATTGCATCCTTTTGTAACCGG CGGCGGCGGCGATGGTTTAGAGAAGCGGCGGAGGAATGTGTTACAGGGTCCTCCTCTGTTTCCTCATCAGATATTTGAACACGGCAGCGCTGTTTTTCAT CAGTGTTAA
AA sequence Show only first row Show all	>Lus10039141 pacid=23150306 polypeptide=Lus10039141 locus=Lus10039141.g ID=Lus10039141.BGIv1.0 annot-version=v1.0 MEWKRGRLLGKGSYGEVFLAVPENPIHSVMAVKSAPLDKSSSLQTEHQILELFRGEPGIVQSFGTSVSHPDGRNTTTKKLNLFLEYANCGSLSNLIKGGL PEVYVKDCTRSLLQSLAVIHSKGIVHCDIKPDNILAFRDRNYPGLYRLKIADFGLAVERRMLHPRSKNYRGTLRYMPLEVVVLGIVSPAMDVWALGCTVV EMLTGEAPWSSCNDQNQVSAEIRKGKRPAIPEWISEEGKDFLQQCFFGASYERVSAEWLLLHPFVTGGGGDGLEKRRRNVLQGPPLFPHQIFEHGSAVFH QC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46140			Protein kinase superfamily pro...		Lus10039141 [exp]	0	1
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10036547 [exp]	1.0	0.9174
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10029016 [exp]	12.6	0.8974
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10031607 [exp]	17.5	0.8966
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10034524 [exp]	19.2	0.8941
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019872 [exp]	21.2	0.8916
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	21.4	0.8927
AT1G08790			Protein of unknown function (D...		Lus10006560 [exp]	24.5	0.8878
AT3G14880			unknown protein		Lus10013711 [exp]	26.2	0.8888
					Lus10009618 [exp]	30.9	0.8806
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	32.6	0.8806

Compare expression of checked genes

Lus10039141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.