Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03795 601 / 0 Exostosin family protein (.1) AT3G07620 454 / 8e-156 Exostosin family protein (.1) AT5G11130 426 / 8e-145 Exostosin family protein (.1) AT5G25310 426 / 9e-145 Exostosin family protein (.1) AT5G20260 397 / 8e-134 Exostosin family protein (.1) AT5G33290 396 / 7e-133 XGD1 xylogalacturonan deficient 1 (.1) AT3G42180 393 / 4e-132 Exostosin family protein (.1.3) AT5G11610 351 / 1e-114 Exostosin family protein (.1.2) AT4G16745 348 / 8e-114 Exostosin family protein (.1.2) AT4G32790 335 / 8e-108 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013790 [exp] 980 / 0 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 509 / 3e-177 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10016058 [exp] 462 / 6e-161 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10008751 [exp] 466 / 1e-159 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 455 / 1e-155 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10027707 [exp] 419 / 4e-142 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10005186 [exp] 397 / 2e-133 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10039980 [exp] 373 / 1e-122 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10001958 [exp] 359 / 4e-121 AT5G25310 372 / 1e-127 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118000 [exp] 691 / 0 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G171100 [exp] 533 / 0 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.014G170900 [exp] 516 / 5e-180 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.006G064600 [exp] 438 / 2e-149 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 436 / 1e-148 AT5G25310 518 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 435 / 1e-148 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 434 / 3e-148 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 426 / 1e-144 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 425 / 1e-144 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 424 / 3e-144 AT3G42180 524 / 0.0 Exostosin family protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10039142 pacid=23150688 polypeptide=Lus10039142 locus=Lus10039142.g ID=Lus10039142.BGIv1.0 annot-version=v1.0 ATGAGAAACGACAAGGTGAAGAAGCTGTGTGGCTCTGCATGCAGGATGTGTTCAAGTTCATCCAACTCGGTCAAACTGCTCTGGGTTTTCGTCCTCTTGA TTCTGGTTTACGGGTTGGTTTCCAATTTCGGTCCGACCCTTTCCGGTTTGGATCTTTTGGCGAGTAATGGAACCGATACAAGCAAAGCAGGGATGGTGAT GGTGGGTGGTGGAAGAGTAGAGAGTGTGGAAGAGAAGAAGATGGCTGTCTCTGCTGATGAGCTGTCACTTGTCCATCGTTCTTCTTCCCCTCCGGTCTCT GTTCACCAGCAGAAGGAACAGCCTCAGCCGCCGGTTATTGATAGTCAGGATGAAGGGTCAAATCTTGACTTGTTAACAACAAGTAAAAACCAGTCCTCTG CCTCTAATCCAGTACCCAACTCTGCTTCAGTCTCAATCAACGAAACCCAAGATCTAGCCTTGGAGAAGAAACAGATCAAGAAAGAGATCACAAGCTTAGA CAAAGTGGAAGCCGGTTTACAAAAGGCTCGTCTCGCAATCAAACAATCCAAAATCGGAAACCAAACCCTCGACGATCCCCAGTATGTCCCCACCGGACCA ATGTACTGGAACGCTAGAGCATTCCACGCTAGCTACAGAGAAATGGAGAAGCAGTTCAAGGTGTTTGTGTACGAGGAAGGTGAGCCTCCCTTGTTTCATA ATGGGCCCTGTAAGAGTATCTACGCCATGGAAGGGAACTTCATCCACGGAATGGAGATCGACCCCAAGTTCCGGACCAAAGACCCCGACAAGGCGCACAT GTTCTTCCTTCCATTCAGTGTGGCTATGCTGGTCCAGTTTGTTTATGTCCGAGATTCTCATGACTTTGGTCCGATTAGAAGGACTGTTGCGGATTATGTG GAGCTGGTTGCGAAGAAGTATCCGTACTGGAATCGGAGTCTCGGGGCTGATCATTTCATGCTCGCTTGCCACGATTGGGGGCCAGAAGCTTCATTCTCTG TACCATTCCTCGGGAAGAACTCCATCCGCGCATTGTGCAATGCCAACACCTCGGAGCGTTTCAATCCTGTCAAGGACGTGTCGTTCCCCGAGATCAACCT CCGGACTGGTACAACAAGGGGCTTCATCGGAGGGCCGTCCCCATCGAAACGATCCATCCTAGCATTCTTCGCGGGAGGACTTCACGGTCCAATAAGGCCG ATCCTGCTTCAGCATTGGGAGAAGAAGAACGACGAGGATGTTCGTGTACATCAGTATCTCCCCAAGGGAATATCATACTACGACATGATGAGGAAGAGCA AGTTCTGCCTATGTCCCAGCGGGTACGAGGTAGCCAGTCCTCGAGTCGTGGAGGCAATCTACGCTGGCTGCGTTCCAGTCCTCATATCGGACCACTACGT GCCTCCGTTTAGCGACGTATTGAACTGGAAATCGTTCTCGGTAGAAGTTCCAGTGAGCGAGATCCCGAGTTTGAAGACCATTCTGGAAGGAATATCGCCG AGGCAGTACATTAGGATGCAGAGGAGAGTATTGCAAGTGAGAAGGCATTTCGAGGTGAATTCTCCTGCCCGACGGTACGACGTTTTCCATATGATCCTGC ACTCTATTTGGCTGAGGAGGTTGAATGTCAGGATTCATGGTGATCAATTGGCCACCATCACCAGCTGA
AA sequence Show only first row Show all	>Lus10039142 pacid=23150688 polypeptide=Lus10039142 locus=Lus10039142.g ID=Lus10039142.BGIv1.0 annot-version=v1.0 MRNDKVKKLCGSACRMCSSSSNSVKLLWVFVLLILVYGLVSNFGPTLSGLDLLASNGTDTSKAGMVMVGGGRVESVEEKKMAVSADELSLVHRSSSPPVS VHQQKEQPQPPVIDSQDEGSNLDLLTTSKNQSSASNPVPNSASVSINETQDLALEKKQIKKEITSLDKVEAGLQKARLAIKQSKIGNQTLDDPQYVPTGP MYWNARAFHASYREMEKQFKVFVYEEGEPPLFHNGPCKSIYAMEGNFIHGMEIDPKFRTKDPDKAHMFFLPFSVAMLVQFVYVRDSHDFGPIRRTVADYV ELVAKKYPYWNRSLGADHFMLACHDWGPEASFSVPFLGKNSIRALCNANTSERFNPVKDVSFPEINLRTGTTRGFIGGPSPSKRSILAFFAGGLHGPIRP ILLQHWEKKNDEDVRVHQYLPKGISYYDMMRKSKFCLCPSGYEVASPRVVEAIYAGCVPVLISDHYVPPFSDVLNWKSFSVEVPVSEIPSLKTILEGISP RQYIRMQRRVLQVRRHFEVNSPARRYDVFHMILHSIWLRRLNVRIHGDQLATITS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03795			Exostosin family protein (.1)		Lus10039142 [exp]	0	1
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10027807 [exp]	2.8	0.7366
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10012462 [exp]	3.2	0.7222
AT5G43400			Uncharacterised conserved prot...		Lus10041147 [exp]	3.5	0.7254
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10030472 [exp]	5.6	0.7744
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	9.5	0.7197
AT5G48290			Heavy metal transport/detoxifi...		Lus10025180 [exp]	10.8	0.7056
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	11.0	0.7231
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	11.8	0.6945
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10015050 [exp]	12.5	0.6729
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026378 [exp]	13.4	0.7028

Compare expression of checked genes

Lus10039142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.