Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16880 509 / 0 Target of Myb protein 1 (.1.2.3) AT1G06210 238 / 3e-75 ENTH/VHS/GAT family protein (.1.2) AT4G32760 154 / 4e-41 ENTH/VHS/GAT family protein (.1.2) AT1G21380 143 / 5e-38 Target of Myb protein 1 (.1) AT1G76970 141 / 9e-38 Target of Myb protein 1 (.1) AT3G08790 139 / 4e-36 ENTH/VHS/GAT family protein (.1) AT5G01760 129 / 1e-32 ENTH/VHS/GAT family protein (.1) AT2G38410 108 / 3e-25 ENTH/VHS/GAT family protein (.1) AT5G63640 87 / 2e-18 ENTH/VHS/GAT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013788 [exp] 732 / 0 AT5G16880 509 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10040912 [exp] 545 / 0 AT5G16880 539 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10005924 [exp] 544 / 0 AT5G16880 541 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10024896 [exp] 248 / 2e-79 AT1G06210 387 / 3e-134 ENTH/VHS/GAT family protein (.1.2) Lus10022922 [exp] 228 / 5e-71 AT1G06210 369 / 2e-126 ENTH/VHS/GAT family protein (.1.2) Lus10022140 [exp] 154 / 5e-41 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10014155 [exp] 145 / 3e-38 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10022753 [exp] 145 / 4e-38 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10018948 [exp] 132 / 3e-34 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G050000 [exp] 573 / 0 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.013G082500 [exp] 568 / 0 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.002G038000 [exp] 248 / 1e-78 AT1G06210 409 / 7e-142 ENTH/VHS/GAT family protein (.1.2) Potri.005G225000 [exp] 248 / 2e-78 AT1G06210 402 / 6e-139 ENTH/VHS/GAT family protein (.1.2) Potri.006G241000 [exp] 149 / 1e-39 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.002G075500 [exp] 148 / 1e-39 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.005G184900 [exp] 144 / 3e-38 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.016G131900 [exp] 144 / 1e-37 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 142 / 5e-37 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.018G039100 [exp] 135 / 1e-34 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10039144 pacid=23150422 polypeptide=Lus10039144 locus=Lus10039144.g ID=Lus10039144.BGIv1.0 annot-version=v1.0 ATGAGTGACAACTTGATGGAAAAGGTGAGTGCTTTCGGCGAGCGCCTCAAGATCGGAGGAGCCGAGGTGGGCCGAAAAATGAGTGCCGGCATGACTTCTA TGAGCTTCAAGATGAGAGAAATGTTTCAAGGTCCCAACCAGGCAGATAAGATAGTCGAGGAAGCTACGGCCGAGGCGCTCGAAGAACCCGATTGGGCTAT GAATCTGGAAATATGTGACATGCTGAATCACGAAAGGATCAACTGTGTCGAATTAGTCCGCGGGATAAAGAAGAGGATTGGTGTGAAGAGTGCTAGAGTT CAGTATTTGGCTTTGGTGTTGCTTGAAACATGTGTGAAGAATTGTGAGAAGGTGTTTGCTGAGGTGGCAGCTGAAAGAGTTCTTGACGACATGGTTATGC TGATCGATGATCCTCAGACTGTTGTTAATAACAGGAATAAGGCTTTGATCTTGATTGAAGCATGGGGCGAATCAACCAGTGAGCTACGATATTTGCCCGT TTACGAAGAAACATACAAGAGCTTGAGATCAAGGGGCATCCGGTTCCCTGGCCGGGACGAGATGAGCTTGGCACCGATCTTTACTCCACCTCGTTCCATT ACAGCCTCTGAAGGGGATACCAGGCTTGCTCACCAGATTCATCGAGAGGCTACTGTTCAAAGTCTATCTACTGAGCAAATGAAAGAAGCTTTTGATGTGG CGAGGAATACCATTGAACTTCTCACTACAGTTTTATCCTCTTCACCTGGACAAGATGCCTTGAAGGATGATTTGACTAGTACACTAGTCCAGCAGTGTCG CCAATCTCAGTCCACAATCCAGAGAATCATCGAGACGGAGGGGGATAACGAGGCGATGCTCTTTGAAGCTTTGAATGTCAACGACGAGATCCAGAAGGCT CTGTCCAAGTATGAAAGGATCGAGAAGCCACTGCCCGTGGTACCTTCTGAACCAGTACCTGTGGAAGCCAGTGATCACTCGTCCGTTCATGTAAAAGAAG AAGAAGATGCATTGATCAGAAAGCCAACAGGTTTTCGAGCTGGAACGTCGCATGGAGAAGGAAGCAACGAGGATATGATGGACGATCTTGATGAGATGAT CTTCGGGAAGAAAGGTGGGGGCAACACATCGACTGTCGATAAGAAGCAAGAGTCGTCGTCGAAGGACGATCTCATCAGTTTATGA
AA sequence Show only first row Show all	>Lus10039144 pacid=23150422 polypeptide=Lus10039144 locus=Lus10039144.g ID=Lus10039144.BGIv1.0 annot-version=v1.0 MSDNLMEKVSAFGERLKIGGAEVGRKMSAGMTSMSFKMREMFQGPNQADKIVEEATAEALEEPDWAMNLEICDMLNHERINCVELVRGIKKRIGVKSARV QYLALVLLETCVKNCEKVFAEVAAERVLDDMVMLIDDPQTVVNNRNKALILIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDEMSLAPIFTPPRSI TASEGDTRLAHQIHREATVQSLSTEQMKEAFDVARNTIELLTTVLSSSPGQDALKDDLTSTLVQQCRQSQSTIQRIIETEGDNEAMLFEALNVNDEIQKA LSKYERIEKPLPVVPSEPVPVEASDHSSVHVKEEEDALIRKPTGFRAGTSHGEGSNEDMMDDLDEMIFGKKGGGNTSTVDKKQESSSKDDLISL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10039144 [exp]	0	1
AT2G15730			P-loop containing nucleoside t...		Lus10042667 [exp]	3.7	0.8305
AT3G50620			P-loop containing nucleoside t...		Lus10002971 [exp]	4.7	0.8373
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020080 [exp]	6.9	0.8480
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10032746 [exp]	8.7	0.8570
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10011678 [exp]	12.8	0.7899
AT4G23885			unknown protein		Lus10003881 [exp]	15.0	0.7413
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10041020 [exp]	15.0	0.8080
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	15.2	0.8238
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Lus10029795 [exp]	16.2	0.7889
AT1G56140			Leucine-rich repeat transmembr...		Lus10020688 [exp]	17.0	0.8283

Compare expression of checked genes

Lus10039144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.