Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16890 650 / 0 Exostosin family protein (.1) AT2G35100 239 / 2e-73 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT1G67410 229 / 9e-70 Exostosin family protein (.1) AT1G74680 220 / 5e-66 Exostosin family protein (.1) AT5G44930 216 / 9e-65 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT1G34270 215 / 7e-64 Exostosin family protein (.1) AT3G03650 213 / 5e-63 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT3G45400 209 / 2e-61 exostosin family protein (.1) AT5G22940 101 / 6e-23 F8H FRA8 homolog (.1) AT2G28110 99 / 5e-22 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013787 [exp] 911 / 0 AT5G16890 673 / 0.0 Exostosin family protein (.1) Lus10038355 [exp] 235 / 7e-72 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10015791 [exp] 235 / 2e-71 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10036219 [exp] 236 / 5e-71 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10037016 [exp] 233 / 5e-71 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10002060 [exp] 225 / 2e-67 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10033734 [exp] 222 / 4e-66 AT1G34270 684 / 0.0 Exostosin family protein (.1) Lus10031610 [exp] 221 / 1e-65 AT1G34270 685 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 220 / 2e-65 AT3G45400 644 / 0.0 exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049800 [exp] 703 / 0 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.012G124600 [exp] 244 / 7e-75 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 243 / 2e-74 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.008G034500 [exp] 220 / 4e-66 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.002G210000 [exp] 221 / 6e-66 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.013G116200 [exp] 221 / 6e-66 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 218 / 4e-65 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.013G067400 [exp] 211 / 5e-62 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.019G044600 [exp] 207 / 2e-60 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.009G006500 [exp] 102 / 4e-23 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10039145 pacid=23150529 polypeptide=Lus10039145 locus=Lus10039145.g ID=Lus10039145.BGIv1.0 annot-version=v1.0 ATGGCCACCAAATTCTCCTCCAGATCCAGATCGCCGATCTTCCTATTCTCCATTTTCATAGCTGTCGCTGTATCTCTTCTCATCCTTACCTTCATCTTCT CATCCTCTCCCCCAACATTGCATTCCTCCCCCGCTGGCCTTCTATCCTCCTCCGTCTCTATACGCCCGGAGACCTCCTTCGTCACTTCTCTGCGCAATTT CCTCATCTCCCGCCCTTCCGATGGAGATGCGCTTATTTCTGAAAGCCACCTTCCTCCCAGCTCCACTGTCCTGGATGATGCCGTATTTGACCGGCAGACT GATCGGATGTACCGAGGGGACTCGATTTACCCTCTTGATTTTCCGCTTAGAGTTTACGTCTACCGGATGCCTCTCAAGTTCACGTACGATTTGCTCCGCT TGTTCGATAGCACTTATCAAGACACTAACAACCTCACTTCCAATGGAAGCCCTGTCCATCGACTCATCGAACAGCATTCTGTGGATTATTGGCTTTGGGC GGATTTGATAGCACCTCAGTCAGAAAGGCTTCTGAAGAGCGTCATCAGAGTGGATAGGCAGGAGGATGCGGACTTGTTCTACATCCCTTTCTTCACCACC ATTAGCTTCTTCTTGCTGGATAAGCAGGAATGCAAACCGCTTTATAGGGAAGCTCTGAAATGGGTAACAGATCAGCCTGCGTGGAAGAGGTCTCAGGGAA GGGATCACATACTTCCCGTGCATCATCCTTGGTCTTTCAAGTCGGTTCGTAGATACATGAAAAATGCTATTTGGTTGTTACCAGACATGGATTCCACTGG GAACTGGTACAAGCCAGGACAAGTTTACTTGGAGAAAGACTTGATCTTGCCTTATGTTGCCAACCTTGATCTGTGTGATGCAACATGCTTAGCGGAATAT GAATCGAAGAGGACAACCTTGTTGTTCTTTCGCGGACGGCTCAAAAGAAATGCTGGTGGGAAGATACGGGCTAAACTTGTATCACAACTAAGTGGAGCTG AAGGTGTGGTTATACAGGAGGGAACGGCTGGCGAGCGAGGGAAAGAACTAGCCCAAAACGGCATGCGAAAGTCCATCTTTTGCTTGAATCCGGCTGGTGA TACTCCATCATCTGCAAGACTCTTTGATGCTATAGTCAGTGGATGCATTCCAGTAATAATTAGTGATGAGTTGGAACTTCCTTTTGAAGGAATTCTTGAT TACAGAAAGATAGCTCTATTTGTTTCTTCCAGCGATGCTTCAGAACCAGGATGGCTAATACAATTCTTAAGAAGTATCAGTCGTGCTCAGATTAAAGAGA TGCAAGCTAACCTTGCTAAGTACTCGAGGCATTTTGTTTATTCAAGTCCAGCTCAACCATTCGGACCTGAAGACTTGGTCTGGAGAATGATGAGTGGGAA GATGGTGAATATAAAGCTGCATATTCGAAGATCTCAGCGGGTAGTGAGGGAGTCGAGAAGCATCTGCACTTGCGACTGTAGACGGCCAGCCGGGAATGTC ACTCTTCCAGGTCAGATAACGACGTCTTTGTAG
AA sequence Show only first row Show all	>Lus10039145 pacid=23150529 polypeptide=Lus10039145 locus=Lus10039145.g ID=Lus10039145.BGIv1.0 annot-version=v1.0 MATKFSSRSRSPIFLFSIFIAVAVSLLILTFIFSSSPPTLHSSPAGLLSSSVSIRPETSFVTSLRNFLISRPSDGDALISESHLPPSSTVLDDAVFDRQT DRMYRGDSIYPLDFPLRVYVYRMPLKFTYDLLRLFDSTYQDTNNLTSNGSPVHRLIEQHSVDYWLWADLIAPQSERLLKSVIRVDRQEDADLFYIPFFTT ISFFLLDKQECKPLYREALKWVTDQPAWKRSQGRDHILPVHHPWSFKSVRRYMKNAIWLLPDMDSTGNWYKPGQVYLEKDLILPYVANLDLCDATCLAEY ESKRTTLLFFRGRLKRNAGGKIRAKLVSQLSGAEGVVIQEGTAGERGKELAQNGMRKSIFCLNPAGDTPSSARLFDAIVSGCIPVIISDELELPFEGILD YRKIALFVSSSDASEPGWLIQFLRSISRAQIKEMQANLAKYSRHFVYSSPAQPFGPEDLVWRMMSGKMVNIKLHIRRSQRVVRESRSICTCDCRRPAGNV TLPGQITTSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16890			Exostosin family protein (.1)		Lus10039145 [exp]	0	1
AT1G51160			SNARE-like superfamily protein...		Lus10039298 [exp]	3.5	0.8954
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Lus10018502 [exp]	4.0	0.9021
AT2G46850			Protein kinase superfamily pro...		Lus10005138 [exp]	6.6	0.8989
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	10.6	0.9049
AT5G24070			Peroxidase superfamily protein...		Lus10022962 [exp]	18.2	0.8971
AT1G42960			unknown protein		Lus10012242 [exp]	18.2	0.9001
AT3G15395			unknown protein		Lus10038792 [exp]	20.6	0.8776
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10029494 [exp]	25.6	0.8415
AT1G31910			GHMP kinase family protein (.1...		Lus10012122 [exp]	27.6	0.8929
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	28.4	0.8918

Compare expression of checked genes

Lus10039145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.