Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16920 112 / 6e-29 Fasciclin-like arabinogalactan family protein (.1) AT5G26730 66 / 3e-12 Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013786 [exp] 389 / 2e-136 AT5G16920 125 / 6e-34 Fasciclin-like arabinogalactan family protein (.1) Lus10006371 [exp] 82 / 3e-18 AT5G26730 140 / 5e-41 Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049600 [exp] 133 / 1e-36 AT5G16920 154 / 2e-45 Fasciclin-like arabinogalactan family protein (.1) Potri.006G016700 [exp] 74 / 5e-16 AT5G26730 91 / 5e-23 Fasciclin-like arabinogalactan family protein (.1) Potri.016G009000 [exp] 61 / 6e-12 AT5G16920 57 / 1e-11 Fasciclin-like arabinogalactan family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039146 pacid=23150623 polypeptide=Lus10039146 locus=Lus10039146.g ID=Lus10039146.BGIv1.0 annot-version=v1.0 ATGGCCTCCTCATCACTTCTGCAACTGCTACTCCTGCAGTGTGCTGCTGCTTTCATACTATCAGCTGCCGGTCCCGTCTCTGCTGCCAATTCTCTTTCAT CGTTATTACCGGCACGAGCATCCGTTCACGGCATTTACAGTAATGGCGGTAATGAAGAAGACAGCCGAGAAGATGATCTTGTTATTGCGACGGAAGAGAT GAGGATAGCTAATTACTTCACGTTTGTGATGCTCCTGAATATGGCGGTTAACGGCGATCATAATGACGACAACGATCATAATGCGGCAAATGTAACCTTC CTCATGCCCAACGACCGCATCTTGTCCAACATCACTTTCACCACCCAAAACCACGACAAATATGATAATGCATCGTCCTCCAACACCGCTACTCCTACGT GGTCCGTTCGAGAGTTCATTATGCATCACTCGATCCCATCTCCGTTGCTCTTCAACCATCTATGGCACTTCCCGTCCGGTTCCACCATCCCAAGTTCCTA CCCGGGGTATGTGCTTCAGGTCCAAAATGACAACGAGGGACATCAAGATGGGAAATGGTGGAGAAGAAGGGGCAACTTCTCCCTCAACAACGTTAAGATC ATCAGCCCGAATATCTGCACCTCTCCTTCCTCTACCATCCGATGCCATGGCATCGACAGTGTCCTCTCCCCGGCTCCGATTCCTCCTCCTTCCACACCTC CTGTTTACTACTGCGCTCCTAAACCCGCTCCTGCCCCATCTAATAATGATCATGATAAGCTCGCCCCAAATTCCGCACCATCCTCCAACCACTTTGATTA CATAGGTCCCGGTGCAGAGTCTCCGCCGCCCTCTTCCCACACTAACTCATCATCATCACATACTCCTGCAGCTACTCATCCCACCTCTGCTGCTGGAATT GGACTTCGCCCCGGTCCTGGTTTCCAACTGCTACTATCACTCGTCGTGTTATTATGGTAG
AA sequence Show only first row Show all	>Lus10039146 pacid=23150623 polypeptide=Lus10039146 locus=Lus10039146.g ID=Lus10039146.BGIv1.0 annot-version=v1.0 MASSSLLQLLLLQCAAAFILSAAGPVSAANSLSSLLPARASVHGIYSNGGNEEDSREDDLVIATEEMRIANYFTFVMLLNMAVNGDHNDDNDHNAANVTF LMPNDRILSNITFTTQNHDKYDNASSSNTATPTWSVREFIMHHSIPSPLLFNHLWHFPSGSTIPSSYPGYVLQVQNDNEGHQDGKWWRRRGNFSLNNVKI ISPNICTSPSSTIRCHGIDSVLSPAPIPPPSTPPVYYCAPKPAPAPSNNDHDKLAPNSAPSSNHFDYIGPGAESPPPSSHTNSSSSHTPAATHPTSAAGI GLRPGPGFQLLLSLVVLLW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16920			Fasciclin-like arabinogalactan...		Lus10039146 [exp]	0	1
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033500 [exp]	1.0	0.8587
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10007340 [exp]	2.4	0.8113
AT3G26010			Galactose oxidase/kelch repeat...		Lus10003692 [exp]	4.5	0.7355
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030883 [exp]	6.6	0.7322
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	9.2	0.7663
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10034068 [exp]	9.4	0.7580
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028368 [exp]	10.2	0.7271
AT5G41650			Lactoylglutathione lyase / gly...		Lus10024719 [exp]	11.3	0.7053
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039299 [exp]	11.7	0.7123
AT1G24110			Peroxidase superfamily protein...		Lus10029201 [exp]	14.3	0.7486

Compare expression of checked genes

Lus10039146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.