Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18110 653 / 0 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 127 / 1e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09820 116 / 2e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39980 116 / 3e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 113 / 2e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 112 / 6e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT2G32630 112 / 6e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G15630 111 / 1e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 108 / 4e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 110 / 5e-25 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013785 [exp] 414 / 4e-142 AT3G18110 296 / 3e-91 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 118 / 9e-28 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018318 [exp] 117 / 2e-27 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10012068 [exp] 115 / 1e-26 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 114 / 2e-26 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017134 [exp] 114 / 2e-26 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013894 [exp] 113 / 8e-26 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 112 / 9e-26 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 112 / 1e-25 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G123900 [exp] 721 / 0 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G036400 [exp] 712 / 0 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 124 / 6e-30 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G075700 [exp] 124 / 1e-29 AT5G39980 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 123 / 1e-29 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 122 / 2e-29 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 122 / 3e-29 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074700 [exp] 119 / 1e-28 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 121 / 2e-28 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G021200 [exp] 120 / 2e-28 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039148 pacid=23150711 polypeptide=Lus10039148 locus=Lus10039148.g ID=Lus10039148.BGIv1.0 annot-version=v1.0 ATGAAGGCTGCTGGTTATTTTCCCAGCATGCATCTTTACAGGGTGATGATTGCATTGTTATGCCAAGGGAAAAGGGTAAGGGATGCTGAAGTTATGGTTT CTGAAATGAAAGAAGCAGGGTTGGAACCTGATCTCCCAATATGGAATTCGATGCTGAAGTTATATGTTGGAAACAATGATTTTAGAAACGCGGTTCAAAT CTATCAGCAGATAAAAAACAATGGACTTGTTCCAGACGAGGACACGTACAACACGTTGGTAGTTATGTACTGTAGAAATCGTAGGCCAGCAGAAGGCTCC TCATTGGTAACTGAAATGGTACGACTGGGATTGGAGCCTAGGTTAGGTACCTACAAAAGTTTGCTCATTGCATTCGGTAGACTGCAGCTAGTGTCACAAG CCGAGGAACTCTTTGCCGAGTTAGTGGAGAAAGGACATAAATTGGACCGGTTTTTCTACCATACAATGATGAAAATCTTCCGGAATTCAGGAAACCATGG CAAAGCTGAGAGCCTGTTGAAAATGATGAAAGATGCAGGAATAGAGCCTACTACTGCAACAATGCACTTGCTTATGGTGACCTATGGTGCCTCTGGAAAT CCTAAGGAAGCTGATGAAGTTCTTAACAACATAAAACACGCAGGTTTAGATCTCAGCACACTTCCATATGCTTCTGTCATTGAGGCTTATTTTAAGGAAG GAGAGTACAGCGCCGGAATACAGAAACTTGAGGAGATGAAGAGAGAGGGCTTTGAGGCAGATCATAGGATATGGACATGCTTTATCAGGGGTGCAAGTTT GGCGGAGCATAGTAATGAAGCTATTAACCTTTTAAGTGCTCTGGGAGATGCTGGGTTTGATCTTCCTGTCAGGCTTCTGACAAAAAGTTCTGAATCACTA ATTCCTGAAGTGGATGATTGTCTCGAGATGCTAGGAACAATGCCAGACAATGCAGCACTGAACTTTGTAAATGCATTGGAGGATTTGTTGTGGGCATATG AACAAAGAGCCACCGCGTCATGGGTTTTCCAGTTGGCAGTCAAGAGGCGCATCTATCCTCACGAGGTGTTAAGGGTGGCTGACAGCGACTGGGCAGCTGA TTTCCGGAAGCTATCAGGGGGTGCAGCTCTTGCTGGTCTTACCTTATGGCTAGATCATATGCAGGCAAGAACAGCGGAGTATAACATGGTGTCACTCAGC AGCACAGTGAAAGCGTACCTATGGGAGATGGGGGCACCGTTTTTTCCTTGCAGGACACGGAGTGGTGTCCTGATGGCCAAGGCCCACTCTCTGAAAATGT GGTTGAAGGACTCTCCTTTCTGCCTGGACCTGGAGCTGAAGAACTCCACATCATTACCCGATTCCAACTCGATGTGCGTATTCGAAGGATCCTTCATGAG ATGTGAATTGGTTCCTGCTTTCAAGGAGATCACCGAGAAACTTGGGACGAAGGTGAGGCCCAAGAAATTCGCCCAGTTAGCTATGCTGTCTGGGGAGAAG AGAGAGAGCGCCATTAAAGCTGACATAGAGGGAAGAAAGGAGAAGCTTGAGAAGATGATGAGGAGGAAGCAGACGGTTGATCTGAAAAATGACAAAATGA GGAGGAGAAGGGCTATTTATAGAAGCGAAATTGTCGCGGAACGAGGAGACAGCAGAGATATTACTCGTTCTGACATCATTGGCATCCGGGAAGCATGA
AA sequence Show only first row Show all	>Lus10039148 pacid=23150711 polypeptide=Lus10039148 locus=Lus10039148.g ID=Lus10039148.BGIv1.0 annot-version=v1.0 MKAAGYFPSMHLYRVMIALLCQGKRVRDAEVMVSEMKEAGLEPDLPIWNSMLKLYVGNNDFRNAVQIYQQIKNNGLVPDEDTYNTLVVMYCRNRRPAEGS SLVTEMVRLGLEPRLGTYKSLLIAFGRLQLVSQAEELFAELVEKGHKLDRFFYHTMMKIFRNSGNHGKAESLLKMMKDAGIEPTTATMHLLMVTYGASGN PKEADEVLNNIKHAGLDLSTLPYASVIEAYFKEGEYSAGIQKLEEMKREGFEADHRIWTCFIRGASLAEHSNEAINLLSALGDAGFDLPVRLLTKSSESL IPEVDDCLEMLGTMPDNAALNFVNALEDLLWAYEQRATASWVFQLAVKRRIYPHEVLRVADSDWAADFRKLSGGAALAGLTLWLDHMQARTAEYNMVSLS STVKAYLWEMGAPFFPCRTRSGVLMAKAHSLKMWLKDSPFCLDLELKNSTSLPDSNSMCVFEGSFMRCELVPAFKEITEKLGTKVRPKKFAQLAMLSGEK RESAIKADIEGRKEKLEKMMRRKQTVDLKNDKMRRRRAIYRSEIVAERGDSRDITRSDIIGIREA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039148 [exp]	0	1
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	4.9	0.9049
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	5.2	0.8896
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Lus10027610 [exp]	6.0	0.9119
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	6.2	0.9141
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10023283 [exp]	6.3	0.8967
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10012884 [exp]	8.9	0.8616
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	10.1	0.8918
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Lus10039499 [exp]	10.8	0.9010
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005489 [exp]	11.0	0.8859
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10035676 [exp]	14.5	0.8322

Compare expression of checked genes

Lus10039148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.