Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18110 929 / 0 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 202 / 7e-54 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G02860 200 / 1e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 196 / 9e-52 GUN1 genomes uncoupled 1 (.1) AT2G18940 194 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 187 / 4e-50 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G41720 182 / 5e-48 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G31850 184 / 2e-47 PGR3 proton gradient regulation 3 (.1) AT5G39710 177 / 4e-46 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 173 / 2e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002107 [exp] 238 / 1e-66 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 230 / 3e-63 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033127 [exp] 193 / 7e-51 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10003657 [exp] 187 / 1e-49 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10022290 [exp] 186 / 4e-49 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10020002 [exp] 186 / 1e-48 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 185 / 2e-48 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 181 / 6e-47 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025473 [exp] 180 / 9e-47 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036400 [exp] 1011 / 0 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123900 [exp] 1008 / 0 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 197 / 3e-52 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 197 / 6e-52 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.014G118500 [exp] 196 / 7e-52 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.006G049900 [exp] 195 / 1e-51 AT2G41720 1169 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G193900 [exp] 189 / 8e-50 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.015G069100 [exp] 189 / 9e-50 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.006G166200 [exp] 188 / 2e-49 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G297300 [exp] 187 / 4e-49 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039149 pacid=23150367 polypeptide=Lus10039149 locus=Lus10039149.g ID=Lus10039149.BGIv1.0 annot-version=v1.0 ATGGCGGGATGCAGTAGTAATGGAGGAATGTTACTCCCTTTTCCTTCCTTACCATCCTCACCTCTTCCTTCACCTTCTCCGCGCTTCTCTGCCATTAAAC CTTCTTCTTCTTCTTCGCCGAATCCTCTAAAATCCCAATCTCATCAGGATTCAGACCCTATAACCAACCAAACTCCTCCCAAATTTAGCTACTCCAGAGC TTCCCCTTCTGTCCGATGGCCTCATCTTCATCCTCCTCCTTCCCCGTCTCCTCCTCCTCCTCAACCTCCGCCTACTCTTGACGACGTCAAAGAAGAAGAA GACCTATTAGAAGAGAATGCTGCTTCCACTCATTCCTCGGAATCCTTTTTCTCCGACGAACAACTACCGCCACTGCCGACCACCTCCACTTCCAGGAACA AGATTAAGAAGTTCAACAAACTGGCACTCAAGAGGGCCAAAGACTGGAGGCAGAAGGTCCGCTCCTACGCCACCGCCATCCTCGAATTGGACCCCGACCA ATCCGTCGCCGACGTCTTGGACCGCCGCGAAGTTCAGATGACACCCGCCGACTTCTGCTTCCTCGTTAAATTCGTCGGCCTCCACAGCTGGCATCGCGCT CTCGAGGTGTACGAGTGGCTCAATTTTCGTCGCTGGTATTCCCCCAACCCCAGAATGCTCGCCACCGTATTGGCCGTCCTCGGCAAGGCTAATCAGGAGT CTCTCGCCAGGAAATTGTTCACCAGAGCTATCTGTGATCCTTCCTCCGGTCAAACAAACTCTGATACTGTTCAGGTCTACAACGCTATGATGGGTGTTTA CGCTCGCAGTGGTGATTTTTACAACGTTCGCCAACTGTTCGACGGAATGCGCCAACGAGGTTGCCAACCTGATCTTGTCAGCTTCAACACTCTAATCAAT GCCCGCTTGAAAGCTGGGCCATTCACCCCAAACCTCCCTACTCAGCTCCTTGAGGATGTTTGTGCTTCTGGTCTTAGACCCGACGCCATTACCTATAATA CTCTTATTACTGCTTGCTCCCGCCATTCCAAACTGGAAGAGGCTGTGAAGGTTTTCCATCATATGGAGTCCAGTGGTTGTCAACCTGACCTCTGGACATA CAATGCCATGATCTCGGTTTACGCAAGGTGTGGACTGGCTTCGAAAGCTGATCAGCTTTTCAAGCAGTTGGAAGGTAAAGGGTTCTCTCCTGATGCGGTG ACTTACAACTCCTTGGTGTATGCTTTCGCAAGGGTAGCGAATGAGGGTAAGGTCAATCTAATTTGTGAAGAAATGCTCAGGATGGGGTTTCGCATGGATG AGATGACTTATAACACTATCATCCATATGTATGGAAAGCGTGGTCAGCATGATCTTGCGTTACGAACTTACAGAGAGATGAAATCTTCCAGTCGGAATCC TGATGCTGTTACCTACACCGTGTTGATTGATTCACTTGGAAAAGCTGGAAAGATCGAAGAGGCTTCTGCCATCATGTCAGAGATGTTGGATGCTCAAGTT AAACCCACTCTTGCAACTTTCAGTGCGTTAATCTGCGGATATGCTAAAGTGGGAAATCAAACCAAGGCTGAAGAAACTTACAACTGCATGCTTGACTCTG GTATCAAACCTGACCTTCTTGCATACTCTGTGATGTTGGATATCTTGCTTAGATCTGACGACACCAACAAGGCCATGGTGTTGTACAGAGAAATGGTCCG TGATGGAATTGCCCCCGATCGTGTCCTCTACCAGATATTGCTTCGAGTTCTTCATGAGGAGAACAGAGCGGAAGACATTGAAAGGGTGGTCAGAGATATG GAACAACTTTGTGGTCTGAATTTGCAGACTATATCTTCAATCCTTGTGAAGGGGGATTGTTATGAAGAGGCTTCAAAGATGCTGAGGCGAGCCATCATCA GTGGCTCTGAAGTTGATCAGGATGATCTTTTATCTATACTGAGTTCCTATAGTTCATCTGGGAGACTTCCCGAAGCACTTAGTTTGCTTGAATTATTGAA AGAACATGCTTTTAAGTCCAAGCAATTAATATCAGAAGCTTCTATTGTCGTGTTCTGCAAGGCTAAACAACAAGAAGCCGCTCTAAAGGAGTACACTAAT CTACAAGAGTTTGGACGGCTTTCTAGCAGTTCTGTGGTTTTCGAGTGTTTGATTGACTTCTGTCAGGGAAACAATCTGTTTGCTGAAGCTAGTCAGATCT TTTCGGACATGAGAGCCAATTGTTGCACTATTTGTGATTCTACCTTTGAAAGTATGGTGCTCATGTATTGTAAAATGGATTTCCCTGAAACAGCAGAGCA TCTAATTGATTTGGCAGAAATTCAAGGTGTGATGCTGCACAAGCCTTCTATTTATGTCGAGATCATAAAATCCTACGGGAAGGCAAAGCTGTGGCAGAAA GCAGAAAGCTTAGTTGGGAATCTTCGACAAAGAAGTACAATTGTAGACAGGAAGATCTGGAATTCCTTAATAGATGCTTATGCAGAAAGTGGATGCTACG AACGAGCAAGGGCTGTCTTCAATACAATGATGAACGATGGTCCTTCTCCTACCGTGGATTCCATAAATGGCCTTCTGCAAGCTCTAATTGTTGATGGAAG ACTTGATGAGCTTTATGTGGTCATCGAGGAAATGCAAGATATGGGTTTTAAATAA
AA sequence Show only first row Show all	>Lus10039149 pacid=23150367 polypeptide=Lus10039149 locus=Lus10039149.g ID=Lus10039149.BGIv1.0 annot-version=v1.0 MAGCSSNGGMLLPFPSLPSSPLPSPSPRFSAIKPSSSSSPNPLKSQSHQDSDPITNQTPPKFSYSRASPSVRWPHLHPPPSPSPPPPQPPPTLDDVKEEE DLLEENAASTHSSESFFSDEQLPPLPTTSTSRNKIKKFNKLALKRAKDWRQKVRSYATAILELDPDQSVADVLDRREVQMTPADFCFLVKFVGLHSWHRA LEVYEWLNFRRWYSPNPRMLATVLAVLGKANQESLARKLFTRAICDPSSGQTNSDTVQVYNAMMGVYARSGDFYNVRQLFDGMRQRGCQPDLVSFNTLIN ARLKAGPFTPNLPTQLLEDVCASGLRPDAITYNTLITACSRHSKLEEAVKVFHHMESSGCQPDLWTYNAMISVYARCGLASKADQLFKQLEGKGFSPDAV TYNSLVYAFARVANEGKVNLICEEMLRMGFRMDEMTYNTIIHMYGKRGQHDLALRTYREMKSSSRNPDAVTYTVLIDSLGKAGKIEEASAIMSEMLDAQV KPTLATFSALICGYAKVGNQTKAEETYNCMLDSGIKPDLLAYSVMLDILLRSDDTNKAMVLYREMVRDGIAPDRVLYQILLRVLHEENRAEDIERVVRDM EQLCGLNLQTISSILVKGDCYEEASKMLRRAIISGSEVDQDDLLSILSSYSSSGRLPEALSLLELLKEHAFKSKQLISEASIVVFCKAKQQEAALKEYTN LQEFGRLSSSSVVFECLIDFCQGNNLFAEASQIFSDMRANCCTICDSTFESMVLMYCKMDFPETAEHLIDLAEIQGVMLHKPSIYVEIIKSYGKAKLWQK AESLVGNLRQRSTIVDRKIWNSLIDAYAESGCYERARAVFNTMMNDGPSPTVDSINGLLQALIVDGRLDELYVVIEEMQDMGFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039149 [exp]	0	1
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10008829 [exp]	4.7	0.9056
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030259 [exp]	4.9	0.9035
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	6.1	0.9100
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003675 [exp]	6.9	0.9028
AT3G22690			unknown protein		Lus10039355 [exp]	9.8	0.8961
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10015023 [exp]	12.6	0.8654
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Lus10012091 [exp]	13.0	0.8794
AT1G09010			glycoside hydrolase family 2 p...		Lus10004484 [exp]	13.1	0.8594
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	14.7	0.9021
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042232 [exp]	15.2	0.8936

Compare expression of checked genes

Lus10039149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.