Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33470 161 / 1e-48 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22910 152 / 7e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G46780 132 / 4e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G20880 120 / 1e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22330 115 / 3e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G76460 114 / 8e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G78260 107 / 2e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G54770 100 / 3e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G11412 91 / 5e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G53720 78 / 4e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013781 [exp] 400 / 1e-140 AT1G33470 182 / 1e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030202 [exp] 127 / 3e-34 AT2G46780 224 / 2e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002684 [exp] 122 / 1e-32 AT2G46780 228 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10041423 [exp] 112 / 2e-29 AT3G54770 181 / 3e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10036503 [exp] 111 / 3e-29 AT3G54770 156 / 5e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023817 [exp] 66 / 7e-12 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021035 [exp] 64 / 2e-11 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032591 [exp] 58 / 3e-10 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10025418 [exp] 59 / 8e-10 AT3G15010 336 / 8e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068400 [exp] 248 / 7e-82 AT1G33470 246 / 7e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.013G094400 [exp] 244 / 1e-80 AT1G33470 257 / 3e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G105101 [exp] 141 / 5e-40 AT2G46780 252 / 4e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G179100 [exp] 137 / 1e-38 AT2G46780 275 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G256700 [exp] 131 / 2e-36 AT1G76460 335 / 5e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G004600 [exp] 130 / 4e-36 AT1G76460 377 / 9e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G216800 [exp] 119 / 4e-32 AT3G54770 216 / 4e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G044700 [exp] 118 / 1e-31 AT3G54770 234 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G098100 [exp] 110 / 1e-28 AT1G78260 164 / 5e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G022100 [exp] 103 / 3e-26 AT2G46780 161 / 1e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10039151 pacid=23150297 polypeptide=Lus10039151 locus=Lus10039151.g ID=Lus10039151.BGIv1.0 annot-version=v1.0 ATGAAGAAGTACTTCGAGCAGTTCGGCGACATATTGGAGGCTGTCGTCATCACCGATAAGGCCACCGGCAGATCCAAGGGCTATGGATTCGTAACTTTCC GGGAAGCGGAAGCGGCCATGAAAGCCTGTGTGGATGCAGCTCCGGTGATAGACGGAAGAAGGGCTAACTGCAATCTTGCTTCTTTAGGTGTTCAGAGATC CAAACCCTCCACCCCAAAGCAGCACGCCTCCGCCGCTGGTGGAATTCTAATGGGAACGATCCCTACAGTCAAATCTCAGAAAAACCAAAGTGCTGCAGGG AGGAGCTTTAAGGTAATGAGCTCTTTTCAGACAGCTGGTGGTGGAGGAGGAGCAGCTTTTCCTTCTGCAGCAGCTTTCCCACATTATGCTATTCAACAAG GGATACCTTATAATGTTTATGGGTACTCTGCCTATTCGCCAGACTACGCTTACCCAACGAGCTACTACAGTGTATATGGAGGAGGGTCTCCAATTTATGG GAGTCATGGAGTAGGAGCTGGAGGTGTGTTTACTAACGGTGGAGCCAGCTTTTACCCGTTCCTACAGTATGGTGGCGACAGTGGCAGCACAGCTGCTACT GCGTATACTTCCGGAGCTATGGGGCAAACCTACAGCTTCCAACAGTACCCTCATGGTCATAGCCATGCCAATCAATACCACAACCTTTTCCAATATTCGG CCATCAATTCAGCTGGAAGTGGTGGACTGGGATACCCTCAACATTACGGGAATCCCATGCCATCATCTCTCCCACATCCCACAACCCTGCAACCAGGTGT GACCATGGCTCTTCATCAACATCCCACTCTGCCGGTCCCTCAATATCGCTAG
AA sequence Show only first row Show all	>Lus10039151 pacid=23150297 polypeptide=Lus10039151 locus=Lus10039151.g ID=Lus10039151.BGIv1.0 annot-version=v1.0 MKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREAEAAMKACVDAAPVIDGRRANCNLASLGVQRSKPSTPKQHASAAGGILMGTIPTVKSQKNQSAAG RSFKVMSSFQTAGGGGGAAFPSAAAFPHYAIQQGIPYNVYGYSAYSPDYAYPTSYYSVYGGGSPIYGSHGVGAGGVFTNGGASFYPFLQYGGDSGSTAAT AYTSGAMGQTYSFQQYPHGHSHANQYHNLFQYSAINSAGSGGLGYPQHYGNPMPSSLPHPTTLQPGVTMALHQHPTLPVPQYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	0	1
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	1.0	0.9064
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10013781 [exp]	2.0	0.8641
AT2G40820			unknown protein		Lus10027293 [exp]	2.0	0.9061
AT1G63300			Myosin heavy chain-related pro...		Lus10014980 [exp]	2.4	0.8718
AT2G17550			unknown protein		Lus10016693 [exp]	3.2	0.8628
AT2G40480			Plant protein of unknown funct...		Lus10029056 [exp]	5.7	0.8070
AT1G72880			Survival protein SurE-like pho...		Lus10008390 [exp]	5.7	0.8466
AT3G54030			Protein kinase protein with te...		Lus10017198 [exp]	6.7	0.8482
					Lus10020368 [exp]	7.5	0.8580
AT2G40820			unknown protein		Lus10038998 [exp]	8.1	0.8621

Compare expression of checked genes

Lus10039151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.