Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71250 481 / 1e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 377 / 1e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 321 / 5e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 320 / 4e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT4G18970 299 / 3e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G15720 295 / 1e-97 GLIP7 GDSL-motif lipase 7 (.1) AT1G29660 294 / 2e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 293 / 4e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 282 / 1e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 245 / 4e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016929 [exp] 325 / 6e-109 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10011998 [exp] 308 / 7e-103 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 308 / 1e-102 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 301 / 3e-100 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 298 / 2e-98 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000893 [exp] 284 / 2e-93 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 273 / 3e-89 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 266 / 4e-86 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 256 / 2e-82 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067600 [exp] 531 / 0 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 333 / 9e-113 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 329 / 4e-111 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076500 [exp] 319 / 4e-107 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 314 / 4e-105 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 285 / 1e-93 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 257 / 4e-83 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 254 / 6e-82 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 252 / 5e-81 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 244 / 3e-78 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10039152 pacid=23150319 polypeptide=Lus10039152 locus=Lus10039152.g ID=Lus10039152.BGIv1.0 annot-version=v1.0 ATGAGCGGTATGGTAGTAGTTCTGGCGGTGATGATGATGGCGGTGGCTCCGGGAGTAGTAGTGGCACAGTCGGCAAGAGTTCCGGCGATGTTTGTGTTCG GAGATTCGTTGGTTGAAGTTGGGAACAACAACTATCTGAGCTCCATTGCTAAGTCCAATTACTACCCTTATGGGATCGACTATAACAGAGGCCCTACCGG CAGATTCTGCAACGGCAAAACTTTTGTCGACTTACTTGGGGAGTTGATCGGTGTGGGGTATCCTCTTGCATTTGCTGATCCCACTGCAGTCGGAAGTCGA ATCTTGGGAGGCATCAATTACGCATCCGCTGCTGCCGGTATCCTAGACGAGTCTGGACAGCACTATGGAGAAAGGTACAGTCTAAGCCAACAGGTGCTGA ACTTCGAGACCACACTATACCAACTCCGAACAACCTTAGGAACAACGAACCTACCAAACTACTTAGCAAAATCGATAGTCGTGTTGGTGTTCGGGAGCAA CGACTACATCAACAACTACCTGATGCCGTCGATCTACTCATCGAGCTACAACTACAGCCCGCCTCAGTTCGCGAACCTCCTTCTCAACCGCTACGCCCGC CAGCTGGTCACTCTTTACAACTTGGGACTCCGCAAGTTTCTGATTGCGGGGGTGGGCCCGCTCGGGTGCATCCCTAACCAGCGAGCCAGCGGGCAATCAC CGGCTGACAGGTGTGTCGACCCCGTGAATCAGATGCTGGGCACTTTCAACGAAGGACTTCGCTCTTTGGTTGACCAGCTTAACCGCCAACCCGGTGCCAT GTATGCTTATGGCAACACCTATGCTGCTGTAGGTGATATCCTCAATAACCCAGCCACCTACGGGTTTAGTGTAGTGGACAGAGGATGCTGCGGGATAGGG AGGAACCAAGGCCAAATCACATGTCTCCCCTACGCAATTCCTTGCACCAACAGGAACGCCTTTGTATTTTGGGATGCCTTCCACCCAACCCAATCGGTCA ACTCAATCCTGGCTCGCAGGGCTTTCTCTGGGCCTCAGAGGGACTGCTACCCTATCAATGTTCAACAGATGACCCTCTTCAACTCTCTTCCTGCAGCTCA TCTCCCACCATCCCGTAATTCCAATAATTAA
AA sequence Show only first row Show all	>Lus10039152 pacid=23150319 polypeptide=Lus10039152 locus=Lus10039152.g ID=Lus10039152.BGIv1.0 annot-version=v1.0 MSGMVVVLAVMMMAVAPGVVVAQSARVPAMFVFGDSLVEVGNNNYLSSIAKSNYYPYGIDYNRGPTGRFCNGKTFVDLLGELIGVGYPLAFADPTAVGSR ILGGINYASAAAGILDESGQHYGERYSLSQQVLNFETTLYQLRTTLGTTNLPNYLAKSIVVLVFGSNDYINNYLMPSIYSSSYNYSPPQFANLLLNRYAR QLVTLYNLGLRKFLIAGVGPLGCIPNQRASGQSPADRCVDPVNQMLGTFNEGLRSLVDQLNRQPGAMYAYGNTYAAVGDILNNPATYGFSVVDRGCCGIG RNQGQITCLPYAIPCTNRNAFVFWDAFHPTQSVNSILARRAFSGPQRDCYPINVQQMTLFNSLPAAHLPPSRNSNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71250			GDSL-like Lipase/Acylhydrolase...		Lus10039152 [exp]	0	1
AT3G09890			Ankyrin repeat family protein ...		Lus10022609 [exp]	1.0	0.7971
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10041779 [exp]	2.4	0.7314
AT2G31085		AtCLE6, CLE6	CLAVATA3/ESR-RELATED 6 (.1)		Lus10000464 [exp]	2.4	0.7596
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10009928 [exp]	12.5	0.6921
AT1G13710		CYP78A5, KLUH	KLUH, "cytochrome P450, family...		Lus10015788 [exp]	13.7	0.7157
AT3G59800			unknown protein		Lus10027089 [exp]	18.0	0.6722
					Lus10024934 [exp]	21.0	0.6704
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10005079 [exp]	28.7	0.7070
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	29.5	0.6657
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	29.9	0.6657

Compare expression of checked genes

Lus10039152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.