Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10350 320 / 3e-107 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT1G33280 311 / 2e-104 NAC BRN1, ANAC015, NST5 BEARSKIN 1, NAC domain containing protein 15 (.1) AT1G32770 269 / 3e-87 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) AT1G79580 269 / 6e-87 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT2G46770 260 / 1e-83 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G61910 247 / 8e-79 NAC NST2, ANAC066 NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC domain protein 66 (.1) AT4G36160 247 / 3e-78 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT2G18060 244 / 2e-77 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT5G66300 238 / 9e-76 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT1G62700 236 / 9e-74 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013782 [exp] 585 / 0 AT4G10350 325 / 5e-110 BEARSKIN 2, NAC domain containing protein 70 (.1) Lus10017340 [exp] 268 / 4e-86 AT2G46770 347 / 7e-118 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10002687 [exp] 268 / 1e-85 AT2G46770 358 / 1e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10001664 [exp] 267 / 1e-85 AT1G32770 343 / 2e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10009939 [exp] 261 / 3e-85 AT1G79580 314 / 4e-107 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10030205 [exp] 264 / 4e-84 AT2G46770 357 / 5e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10033239 [exp] 262 / 2e-83 AT1G32770 318 / 2e-106 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10024601 [exp] 244 / 6e-77 AT1G12260 436 / 3e-152 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10031142 [exp] 241 / 1e-76 AT1G12260 351 / 4e-120 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G092400 [exp] 325 / 6e-109 AT4G10350 436 / 5e-154 BEARSKIN 2, NAC domain containing protein 70 (.1) Potri.019G066000 [exp] 323 / 4e-108 AT4G10350 451 / 8e-160 BEARSKIN 2, NAC domain containing protein 70 (.1) Potri.014G104800 [exp] 276 / 2e-89 AT2G46770 380 / 3e-131 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G448400 [exp] 276 / 7e-89 AT1G32770 295 / 4e-97 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Potri.011G153300 [exp] 271 / 3e-87 AT2G46770 297 / 4e-98 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.010G176600 [exp] 268 / 4e-87 AT1G79580 344 / 8e-118 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.002G178700 [exp] 268 / 1e-86 AT2G46770 366 / 1e-125 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.008G080000 [exp] 265 / 4e-86 AT1G79580 333 / 2e-113 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.007G014400 [exp] 253 / 1e-80 AT2G18060 427 / 1e-149 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.015G127400 [exp] 245 / 1e-77 AT1G12260 378 / 4e-130 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10039153 pacid=23150627 polypeptide=Lus10039153 locus=Lus10039153.g ID=Lus10039153.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCGAATGGCGGGGTGCCGCCTGGGTTCCGATTCCATCCTACGGACGAAGAGCTCCTCCATTACTACTTGAAGAAGAAGGTGATGTTTCAGA AGTTTGACATGGAGGTTATCCGAGAGGTGGACTTGAATAAGATGGAGCCTTGGGAGTTGCAAGAGAGATGCAGGATAGGATCGACCCCTCAGAACGAATG GTATTTTTTCAGCCATAAGGACAGAAAGTACCCGACGGGATCTAGGACGAACAGAGCCACAAATGCAGGGTTTTGGAAAGCCACGGGACGTGACAAATGT ATAAGGAACAGCTTCAAGAAAATCGGGATGAGGAAGACACTTGTTTTCTACCGCGGGAGAGCTCCTCACGGCCAGAAGACCGATTGGATCATGCATGAGT ATCGCCTCGAAGATAGTGATACCAATGATCAAGACCACTCAAATTCCAATGAGGATGGGTGGGTGGTGTGCAGGGTGTTCAAAAAGAAGAATCTGTTCAA GATCAACGGCGGAGGTTCAAACAACCACACCAACACTAACAACACCATGAACCACCATCATCATCACCATGCCTTAGGAAGCAGCAGCAGCCTTAATTCC TTATCAATGCTACCAACTACAACCAACTCAGACCATATCCAGCAACACCGACAGCAACAACTACTGACGATGAACGCAATGGGCCCCACAACCTCAAGCA CCATGGACGACAACAACAACAACAACGACCACGATCCAGAAAATAATTACGATCATACCCAGCTAGTAGTCCAGCAGCCTACCCGCTACCACCAATACCT CATGCAGCCTACCGCAGCCTCTTACAATCATCCGTGTAACTTGGAACTCAACAACAACAACAGTAAACAGCTGGAAGTCGACAGCCTGTCCCTTCATCAC TATTCGGCGGCTGTCCCTCCTCTGTTCCAAATGGCGGCCAGAACTGATCATCAGTTGGCCGAGTGGCCCACTGATGAGGCGGCCGCTGCGACCACCATGC AGATGTTTGACCCGCGAATGGTGGCTGCCACTACTTCTTCTCCTCCTCCTCCACATTTGGGAAGTGGTACTAACAACATTAATGTCGGCGGCGGCTGTGA CGGCGACAACCACCACGAATGCTCTTCCTCTAAAGAAAGGGCGGCGGACATCAGCAGCAGTAACAGATTTGACCACCACGTGGACGGTCATCAACAAGAC AATAATGATCAGTCGATTCATAATCTGTCGTTACGTGGTCATGAGATGGACTTTTGGGGCTACCAGAAATAA
AA sequence Show only first row Show all	>Lus10039153 pacid=23150627 polypeptide=Lus10039153 locus=Lus10039153.g ID=Lus10039153.BGIv1.0 annot-version=v1.0 MASSNGGVPPGFRFHPTDEELLHYYLKKKVMFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKC IRNSFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLEDSDTNDQDHSNSNEDGWVVCRVFKKKNLFKINGGGSNNHTNTNNTMNHHHHHHALGSSSSLNS LSMLPTTTNSDHIQQHRQQQLLTMNAMGPTTSSTMDDNNNNNDHDPENNYDHTQLVVQQPTRYHQYLMQPTAASYNHPCNLELNNNNSKQLEVDSLSLHH YSAAVPPLFQMAARTDHQLAEWPTDEAAAATTMQMFDPRMVAATTSSPPPPHLGSGTNNINVGGGCDGDNHHECSSSKERAADISSSNRFDHHVDGHQQD NNDQSIHNLSLRGHEMDFWGYQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10039153 [exp]	0	1
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021135 [exp]	3.2	0.9578
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	3.2	0.9759
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10005544 [exp]	4.2	0.9709
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10024495 [exp]	6.9	0.9635
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	7.2	0.9662
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	7.4	0.9661
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	7.7	0.9703
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	8.5	0.9579
AT1G06930			unknown protein		Lus10024185 [exp]	9.5	0.9641
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	10.1	0.9642

Compare expression of checked genes

Lus10039153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.