Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07820 320 / 5e-107 Pectin lyase-like superfamily protein (.1) AT5G48140 318 / 7e-106 Pectin lyase-like superfamily protein (.1) AT3G07830 314 / 2e-104 Pectin lyase-like superfamily protein (.1) AT3G07840 313 / 7e-104 Pectin lyase-like superfamily protein (.1) AT3G14040 302 / 5e-99 Pectin lyase-like superfamily protein (.1) AT3G07850 298 / 2e-97 Pectin lyase-like superfamily protein (.1) AT2G43870 261 / 7e-84 Pectin lyase-like superfamily protein (.1) AT3G59850 260 / 2e-83 Pectin lyase-like superfamily protein (.1) AT2G33160 263 / 1e-81 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) AT1G02790 255 / 3e-81 PGA4 polygalacturonase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013784 [exp] 699 / 0 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 699 / 0 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 402 / 2e-139 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 350 / 1e-118 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 360 / 2e-118 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 345 / 8e-116 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 345 / 9e-116 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10009605 [exp] 334 / 1e-109 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10043087 [exp] 282 / 4e-94 AT3G07840 268 / 4e-89 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067166 [exp] 382 / 4e-131 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 382 / 4e-131 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 382 / 4e-131 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 381 / 1e-130 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 372 / 3e-127 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 372 / 3e-127 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 372 / 3e-127 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 336 / 5e-113 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.002G202100 [exp] 277 / 8e-90 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1) Potri.002G202200 [exp] 275 / 4e-89 AT1G02790 400 / 7e-138 polygalacturonase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10039154 pacid=23150550 polypeptide=Lus10039154 locus=Lus10039154.g ID=Lus10039154.BGIv1.0 annot-version=v1.0 ATGAAGAAAACAGGCTCCGTCATGAAGATATTATTTCTTCTAGTTTTGGTTACATTTGCAAACGTGGTCAGTGGCCAACGTGGTGCAGCTCAACCCGGCA TGCCAGCGGGTGGGGCCGCACCACCCGCTGGAGGCGTGTTTGATATTTGCAAATATGGCGCGGTAGCCGATGAGAAAACAGACATTACTCAGGCGTTAAC GAAAGCATTTGCAGAAGCATGCGCATCGACTGCACCAGCGACAGTACTAATTCCACCTGGCAACTACTTATGCGGCCAAACCAACTTGAAAGCCCCTTGT GCAGCTCCTTCGATCACATTCCAAGTCCAGGGAACTATTAGGGCCCCTTCAGACATTGCTGGTGATACTTGGTTCCTCTTTGACAACATCAACAACTTGA ACATCGTTGGTGGTGGCATTTTTGACGGCCAAGGTCCCACCTGTTACAAGACCAAGAAATCTGTCGCTGTGAGTATAAGGTTGAACTACGTGACAAATGC AATGATCCAAGGCATAACAAGCAGGGACAGCAAGCAATTTCACTTCATAGTAATTGGAGGAAAGAACATTACTTTCGACCAACTCACAATAACCGCGGCG GGGGACAGTCCTAACACTGACGGAATCCACTTGGGAAGAGCTGCCCAAATAAACATCCTTAACACAAACATCGGAACTGGAGACGATTGCATCTCCGTTG GGGATGGAGTTTCGGACCTCAACGTCCAGAACGTGACATGTGGACCGGGCCATGGAATCGCCGTGGGCAGTTTAGGAAGGTACCCTAACGAGCAACCGGT GAAAGGAATCCACTTCAAGAACTGCACATTGACCAACACATGCAATGGTGTGAGAATCAAATCATGGCCTGATCTGGAGACAGGCTCGGCAGCTGATATC AGCTTTGAAGACATCATAATGAATAACGTCTCTTTCCCAATCGTCATCGATCAAGTTTATTGCCCGTGGAACAAGTGCAAGAAAACAGGGGTGCCGTCGA AAGTGAAGATATCGGGAGTGACATACAACAACATACGAGGAACGTCAGCAACGCCGCAGATAGTGCAAATGAATTGCAGTTCAGCGAATCCGTGTGAGGA TATTAAACTATCTAATATTGACATCCAATCTCCAACTGGCCCCGCCGTCTCTGCTTGCGCCAATGTCAAACCCATCGTTACCGGAACTATCCCGCCTGGT TGCGTCTAA
AA sequence Show only first row Show all	>Lus10039154 pacid=23150550 polypeptide=Lus10039154 locus=Lus10039154.g ID=Lus10039154.BGIv1.0 annot-version=v1.0 MKKTGSVMKILFLLVLVTFANVVSGQRGAAQPGMPAGGAAPPAGGVFDICKYGAVADEKTDITQALTKAFAEACASTAPATVLIPPGNYLCGQTNLKAPC AAPSITFQVQGTIRAPSDIAGDTWFLFDNINNLNIVGGGIFDGQGPTCYKTKKSVAVSIRLNYVTNAMIQGITSRDSKQFHFIVIGGKNITFDQLTITAA GDSPNTDGIHLGRAAQINILNTNIGTGDDCISVGDGVSDLNVQNVTCGPGHGIAVGSLGRYPNEQPVKGIHFKNCTLTNTCNGVRIKSWPDLETGSAADI SFEDIIMNNVSFPIVIDQVYCPWNKCKKTGVPSKVKISGVTYNNIRGTSATPQIVQMNCSSANPCEDIKLSNIDIQSPTGPAVSACANVKPIVTGTIPPG CV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48140			Pectin lyase-like superfamily ...		Lus10039154 [exp]	0	1
					Lus10018716 [exp]	2.0	0.8318
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	11.8	0.8166
AT4G38380			MATE efflux family protein (.1...		Lus10023944 [exp]	13.4	0.7509
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10007355 [exp]	20.4	0.7454
					Lus10025405 [exp]	25.3	0.5114
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10034393 [exp]	27.2	0.7024
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006310 [exp]	28.6	0.7011
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10011244 [exp]	35.4	0.7182
					Lus10021782 [exp]	35.5	0.6981
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	37.4	0.6981

Compare expression of checked genes

Lus10039154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.