Plant FIBer expression Database

Lus10039157 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G33490 244 / 1e-83 unknown protein
AT4G10140 239 / 3e-81 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013777
[exp]
308 / 5e-105 AT1G71340 267 / 7e-87 glycerophosphodiester phosphodiesterase 4, PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G095200
[exp]
270 / 1e-93 AT1G33490 260 / 5e-90 unknown protein
Potri.003G048300
[exp]
264 / 4e-91 AT1G33490 260 / 1e-89 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09835 DUF2062 Uncharacterized protein conserved in bacteria (DUF2062)
Representative CDS sequence
>Lus10039157 pacid=23150638 polypeptide=Lus10039157 locus=Lus10039157.g ID=Lus10039157.BGIv1.0 annot-version=v1.0
ATGGTGGTTGCATCGAGGATGGGATTTGGGGCTTGGTTCAGCAAGAAGGTCGTGGATCCTCTCCAGCAAATCCTACGCAGAGGGACGGAACCAAGGCAAC
TAGCATTTTCTGCAGCTCTTGGTTTTACCCTTGGAGTCTTTCCTATATGTGGAGTCACAGCTGTGCTGTGTGGAATGGCAATCGCATTTCTTGGATCCCG
ATGCCATGCTCCCACTGTGATGTTAGCTAACCTTGTTGCAACTCCTATTGAATTGAGCCTTGTTGTACCCTTCTTGCGCTTTGGAGAACTGATATTTGGT
GGACCTCATTTTCCATTGACATCTGATGCTTTGAAGAAAGTCTTCACCGGGCAAGCTTCTCGTGAGGTCCTTCTAAGCATTATGCATGCGCTAATGGGAT
GGCTTATCGCAGCACCAGCCATCATGGGTGCTCTGTATGTGATATTTTTGCCATGTTTCAAGGTATTGGTTGTCAGATTCCGCAGTGCACCATCAAGCCC
AAGGCAGAGCTTGCTGTCAGAAGTTACCCTTAAGGTAAGAGATTGA
AA sequence
>Lus10039157 pacid=23150638 polypeptide=Lus10039157 locus=Lus10039157.g ID=Lus10039157.BGIv1.0 annot-version=v1.0
MVVASRMGFGAWFSKKVVDPLQQILRRGTEPRQLAFSAALGFTLGVFPICGVTAVLCGMAIAFLGSRCHAPTVMLANLVATPIELSLVVPFLRFGELIFG
GPHFPLTSDALKKVFTGQASREVLLSIMHALMGWLIAAPAIMGALYVIFLPCFKVLVVRFRSAPSSPRQSLLSEVTLKVRD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G33490 unknown protein Lus10039157
[exp]
0 1
AT4G17100 unknown protein Lus10001086
[exp]
1.0 0.8942
AT3G17000 UBC32 ubiquitin-conjugating enzyme 3... Lus10037759
[exp]
1.4 0.8808
AT3G51040 RTH RTE1-homolog (.1.2.3) Lus10041800
[exp]
3.0 0.8708
AT3G09030 BTB/POZ domain-containing prot... Lus10004834
[exp]
4.7 0.8157
AT4G04860 DER2.2 DERLIN-2.2 (.1) Lus10006771
[exp]
5.5 0.8561
AT3G12800 SDRB, DECR short-chain dehydrogenase-redu... Lus10031746
[exp]
7.5 0.8614
AT1G64850 Calcium-binding EF hand family... Lus10010653
[exp]
8.0 0.8263
AT5G53140 Protein phosphatase 2C family ... Lus10019012
[exp]
8.8 0.8465
AT4G29950 Ypt/Rab-GAP domain of gyp1p su... Lus10001628
[exp]
12.2 0.7798
AT2G24220 ATPUP5 purine permease 5 (.1.2) Lus10036272
[exp]
12.4 0.8268

Lus10039157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.