Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71340 379 / 1e-131 AtGDPD4 glycerophosphodiester phosphodiesterase 4, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013777 [exp] 403 / 6e-140 AT1G71340 267 / 7e-87 glycerophosphodiester phosphodiesterase 4, PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G095300 [exp] 431 / 5e-152 AT1G71340 385 / 4e-134 glycerophosphodiester phosphodiesterase 4, PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10039158 pacid=23150267 polypeptide=Lus10039158 locus=Lus10039158.g ID=Lus10039158.BGIv1.0 annot-version=v1.0 ATGGCGACCTCCGGGAAAATAGGAATTAGGAGACAGCAGCCGCAGCCGCAGCCGCAGCAGCTCTACCAAAGGCACGGCGGTTTCTTTCGAGGAGTATTCG GACGTAACAACAATCGGCCGTTATTCCCAGCTTCATTTAGGCTTCTCTCTTCTCGGAAAACATTCCGTCTCGTTATAGCTGCGCTGGCCTTCATCGCTCT TGCTCCTCCGGTCTTCTTCCACTTCCGGCTCCGCCGCTTCCAGCAGATGCAATCAAGAAAATGCGGATGGTTGAATCATCCCCCGCTTGTTTGTGCTCAT GGTGGCGATACAACTAATGCATTTCCCAACACGGTGGCAGCCTATCGGTCTGCTCTTCGGTCTCAGGTAGACTGTATTGAGATTGATGTTTCTCGTTCCT CTGATGGAGTTCTGTTTGCGCTTCATGACAGGGATTTGCAGAAGATATCTCGTAATAGTACCTCCAGAGTTGGTCATTTGACTATGAAAGAGATAAAGGA GCTAAATGTATTTCAGCAATCTCCTCTAGACATCGGTGAGCAAAAGATCCCCACTATTGTCGATGCTTTGAAGTTGGTATCTAGTTCTGTTCGGCAGGTG ATTCTAGATGCAAAAGTTGGACCCCCGTTTTACGAAGATGGACTTGCAAAAGACATTCTTTCTATAGTTAAGAGATCAAAGTGCACAAACTGTGTTGTTT GGGCCAAAAGCGACAGTTTAGCAAGGGATGTGATCAAACTAACATCAGATGTCGTGGTGGGATACATTGTGATGGTGGATCCTAATACCGGCAGGAGAAG CGACCTACTGAGGATGAAAGAGGCCGGAGTGGTTGGTGTTTACCATCGACTAGTGAATGAACGACTTGTGAGGCTTCTCCATGGGAGGCAGAAAAGGGTG TATACATGGACCGTTGATGACCCAGAGTCGATGCGTACGATGTTGATGGAAGGAGTCGATGCGATTGTCACAAACCAACCAAGTTCACTCCAGCAGCTCA TGCAGGACATTCGAAGCGAGTGTCGAGAGGAAGGGTTTTCCTTGCCGAGATGA
AA sequence Show only first row Show all	>Lus10039158 pacid=23150267 polypeptide=Lus10039158 locus=Lus10039158.g ID=Lus10039158.BGIv1.0 annot-version=v1.0 MATSGKIGIRRQQPQPQPQQLYQRHGGFFRGVFGRNNNRPLFPASFRLLSSRKTFRLVIAALAFIALAPPVFFHFRLRRFQQMQSRKCGWLNHPPLVCAH GGDTTNAFPNTVAAYRSALRSQVDCIEIDVSRSSDGVLFALHDRDLQKISRNSTSRVGHLTMKEIKELNVFQQSPLDIGEQKIPTIVDALKLVSSSVRQV ILDAKVGPPFYEDGLAKDILSIVKRSKCTNCVVWAKSDSLARDVIKLTSDVVVGYIVMVDPNTGRRSDLLRMKEAGVVGVYHRLVNERLVRLLHGRQKRV YTWTVDDPESMRTMLMEGVDAIVTNQPSSLQQLMQDIRSECREEGFSLPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10039158 [exp]	0	1
AT3G58670			Protein of unknown function (D...		Lus10033603 [exp]	8.0	0.8515
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036500 [exp]	9.3	0.8302
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	10.0	0.8701
AT2G16460			Protein of unknown function (D...		Lus10018079 [exp]	11.0	0.8474
AT5G62140			unknown protein		Lus10038887 [exp]	12.8	0.8499
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	13.9	0.8684
AT2G27285			Coiled-coil domain-containing ...		Lus10038787 [exp]	14.7	0.8309
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	18.3	0.8556
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10038824 [exp]	18.4	0.8410
AT3G08990			Yippee family putative zinc-bi...		Lus10035531 [exp]	18.5	0.7842

Compare expression of checked genes

Lus10039158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.