Plant FIBer expression Database

Lus10039159 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G33500 99 / 5e-25 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013776
[exp]
226 / 1e-75 AT1G33500 100 / 1e-25 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G095400
[exp]
110 / 2e-29 AT1G33500 216 / 2e-69 unknown protein
PFAM info
Representative CDS sequence
>Lus10039159 pacid=23150403 polypeptide=Lus10039159 locus=Lus10039159.g ID=Lus10039159.BGIv1.0 annot-version=v1.0
ATGGAGGAGTACTTGCAGTACGTGAAGACTCTACGCTCTCAAATGAATGATGTTGAAAATCAAGCAGCGCATGCATCTGCGGAGGAGCACACTCTCGTTA
CTACTATTAACGCCATGGAGAACGATCTCAACTCTGGTTTCACTTCTTCTTCTACTAATGAAAGATCGCCAGTGTTAATAGCAGAGAAGAAACATTTCAA
TGAAGTTTTAGGAAATATGTCAACTGCTGAAGCTCAGATGTGCTCACAGATACAGGAGAAACAAAAGAAGCTTGCGTCTCTGGAGTTAGACTCATCAACT
CTTACACAGACACTGGAGCTTATACAACAAGAAAGAGTCTACTTATCCACCAAACTTGCCGAGAAGAGATCCTTGATTGGTTTCTCTTCAATTCAGATGA
AGCAGTCTATTGATGAGTTGCTATGCAGAGTGAACGAGAGTATGCCCGAGCTGATGAAAATGGACATGAAGAACCTTGAAGAGGAGTATAATGGGTTTTT
GTCTGATAAGGCTGGAGAAATGGACTACTTTCGATCTCTGGAAACGCAAATTAAGAAACTTAAGGATGTTTCTCACAATATCAAATGTACCTGTGGATCG
GAGTACAGGGTAGCAATGGGCTTTAGTGAGTGA
AA sequence
>Lus10039159 pacid=23150403 polypeptide=Lus10039159 locus=Lus10039159.g ID=Lus10039159.BGIv1.0 annot-version=v1.0
MEEYLQYVKTLRSQMNDVENQAAHASAEEHTLVTTINAMENDLNSGFTSSSTNERSPVLIAEKKHFNEVLGNMSTAEAQMCSQIQEKQKKLASLELDSST
LTQTLELIQQERVYLSTKLAEKRSLIGFSSIQMKQSIDELLCRVNESMPELMKMDMKNLEEEYNGFLSDKAGEMDYFRSLETQIKKLKDVSHNIKCTCGS
EYRVAMGFSE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G33500 unknown protein Lus10039159
[exp]
0 1
Lus10017410
[exp]
42.3 0.6841
AT3G61610 Galactose mutarotase-like supe... Lus10012640
[exp]
65.9 0.7640
AT5G55930 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10004237
[exp]
76.4 0.6878
AT1G58100 TCP TCP8 TCP domain protein 8, TCP fami... Lus10019949
[exp]
105.1 0.7213
AT3G45740 hydrolase family protein / HAD... Lus10008416
[exp]
135.1 0.6944
AT4G05120 FUR1, ENT3, FLU... FUDR RESISTANT 1, EQUILIBRATIV... Lus10020079
[exp]
164.7 0.7158
AT5G52230 MBD13 methyl-CPG-binding domain prot... Lus10038869
[exp]
218.6 0.7067
AT1G10710 PHS1 poor homologous synapsis 1 (.1... Lus10004624
[exp]
286.5 0.6874
AT4G35890 winged-helix DNA-binding trans... Lus10025953
[exp]
288.0 0.6864

Lus10039159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.