Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33420 720 / 0 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G22260 242 / 5e-70 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G66170 241 / 2e-69 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01810 230 / 1e-65 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G07714 94 / 1e-21 transcription factor-related (.1) ATMG00550 70 / 9e-14 ATMG00550.1, ORF160 unknown protein AT1G32810 62 / 2e-09 RING/FYVE/PHD zinc finger superfamily protein (.2) AT4G10600 55 / 4e-08 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013775 [exp] 1205 / 0 AT1G33420 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10010966 [exp] 239 / 6e-69 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030773 [exp] 239 / 1e-68 AT5G22260 626 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013251 [exp] 236 / 3e-67 AT5G22260 625 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 169 / 4e-44 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017342 [exp] 64 / 6e-10 AT1G32810 320 / 2e-92 RING/FYVE/PHD zinc finger superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G092000 [exp] 842 / 0 AT1G33420 798 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G134700 [exp] 676 / 0 AT1G33420 634 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G137000 [exp] 660 / 0 AT1G33420 637 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T045600 [exp] 649 / 0 AT1G33420 625 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G135200 [exp] 277 / 6e-83 AT1G66170 728 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G101300 [exp] 264 / 1e-78 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G137200 [exp] 246 / 1e-71 AT2G01810 561 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G152600 [exp] 60 / 6e-09 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2) Potri.001G448900 [exp] 58 / 2e-08 AT4G10600 195 / 3e-56 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10039160 pacid=23150655 polypeptide=Lus10039160 locus=Lus10039160.g ID=Lus10039160.BGIv1.0 annot-version=v1.0 ATGGTGATGAGCAGCAACAGGCCACTCAAGAGAGCAAGAAGGAACAGGATCACCGCCGACCTCCACGACTTCCTCTCCTTCCCCGCCGGGGAAGGCGCCG ACCTTAAGTCGTCGTCGGCGGGGCCGGTCCGGGGCGCAGGGGAAAAGTTTTTTTCTCAACACTCATCGAACCACGCGCGCCTCACGTTCCCTCCTTCCCT CTTCCCTTCTCTCCTGACCTGGCAAATAGTCTTCCGCGTCGGAGATCTAGTCGACGGACCAGATCTCTCCCCTCTCGTCGTCGCTCTCGATATCGTCGAG GAGGACGTGACCAGATCTCCCAGATCTGTTTACTGTAACCAGTGCCGTGTAGTTGGCTGGAGCAGTCATCCGGTGTGTCGGAAGCGGTACCATTTCATCG TGAGAGCAACCGGCGGCGGAAGCAGCACGTCGGAGGGGTTTCAGAAGCTGTGTACCAAATGCGGGAACTCCCTCCAGCTGTCGGACTGCAGGTGCAAGTG GTGCGACTTTGTGGTTACTTCCGACGATTTGGAGGAGTGGGTTTATACCCAGCTTGAAGACAGCACTCACTTGCTTCACGGCGTAGTCCACTCGAATGGG TTCGGCCACCTTTTGAGGGTCAACGGTAAAGAAGGTGGCTCCCAGGCTCTTACCGGAACTCATATCATGAACTTCTGGGATAGACTCTGCAGTGCTCTCT CCGTCAGGAAGGTATCGGTCATGGATGTTTCAAAGAAGTATGGTACTGATTACAGGTTGCTTCATGCCATCACTATGGGACATTCATGGTATGGAAACTG GGGTTATGAGTTTGGGAACGGAAGCTATGCCCTGACATCGGAAGCTTACCAGGGAGTGGTCGAGACTCTTTCAAGTGTGGCTTTAGATCAACTCTCCTTC CATGGACGAGGACCACGGTCACGGTTGCAGGCTGCGATTGCTTTCTACAAGTCGTTGTCCAGCTCTGAGCTTGTGGCACTGAAAGATCTCTTTGCTTTCT TGCTGAGGCTGATTCGTGAAACTAATGGAACACCTGGGTTGAAATCGAATGTGGCGGAGAATGATTCGGGGTCTTCGCGGGTGTTGTGTGCTTGGACGAG GAGTGAGGTTGAGGAGGTCCAGCAGTCTATGATCAAGGTGTTGACAGCAGCATCTAGTGAGACCAAGTGGGTGGCCAGGCACACTCTTAAGGGTGTCATG TGCCGGAAAGCATCTCCGGAGCTTCTCGACTACTCTCTCGCACACCTAGAAGGAATGTTGGCTCCGAAGAACATGGTGGTTCGTGCACGATGCAGTCCTA CTTTGTATGATGTCGAATTCAGGTTGGAGCCTGCTTCCTCATCTCTTCAAAGACTGCACCCGTACTATCCATCAAAAGAGCAGATCAAATCTGACCTGAA ATTATTGTTTGATTCACTGATCAACCCTGAGACAATGGAGAAATTTAGACCCTCAGTAACAAGGCAAGCAGTGATCGACTCTGCAACTAAGCTTATTGAC TGCAAACAATTTATGAAGGACTTCAAACCTGAAAAACAGCTTGTAAATTATTCCTCGAGTATTTATGTCATGTGTCATGTTGAGCTCTTTGACCAATCGA GGGAGGAGCCAGCAATACCTCCGGAACTACTGGTATTGCCTTCAAGTGCCACAGTTGCTAGCCTTAAGAATGAAGCTGGCAAGGCTTTCCAGGAAGTGTA TGCCATGTGTAAAAGGCTTCAGATTGATGGGCTGCTTGAATATGGCTCCCTGGAGGATTCCTTTACCCTGAAGTTTCTGATTGGGTCAACTGGAACCGTG AGGATGAAGGGGACGTGCTCATCCAAAAGTGCAGTCAACCGTTACCGGATGGAGCGGGGGACTGAGAAATGGACTGTAGACTGCACTTGTGGGGCGAAGG ACGATGATGGTGAGAGGATGCTGGCTTGTGACTCCTGTGGTGTCTGGCAGCATACAAGGTGTGCTGGGATTGAAAATTGTGATCCTACTCCGGATAAGTT CTCGTGTATTGGATGCAAGAGCTTGTTATATGAAAAGAGATCGGACTCTGATGCTGGTACTGAACAGTCATCTGAAAGATCCTCTCCAGACAAGATGTCC ACTTGCAGGGGAAAGGAAGCTGCAGCAAACAAAATGGAGAGTAATGAGCTAACTTTGACTTTCAGCGTAAGCTAA
AA sequence Show only first row Show all	>Lus10039160 pacid=23150655 polypeptide=Lus10039160 locus=Lus10039160.g ID=Lus10039160.BGIv1.0 annot-version=v1.0 MVMSSNRPLKRARRNRITADLHDFLSFPAGEGADLKSSSAGPVRGAGEKFFSQHSSNHARLTFPPSLFPSLLTWQIVFRVGDLVDGPDLSPLVVALDIVE EDVTRSPRSVYCNQCRVVGWSSHPVCRKRYHFIVRATGGGSSTSEGFQKLCTKCGNSLQLSDCRCKWCDFVVTSDDLEEWVYTQLEDSTHLLHGVVHSNG FGHLLRVNGKEGGSQALTGTHIMNFWDRLCSALSVRKVSVMDVSKKYGTDYRLLHAITMGHSWYGNWGYEFGNGSYALTSEAYQGVVETLSSVALDQLSF HGRGPRSRLQAAIAFYKSLSSSELVALKDLFAFLLRLIRETNGTPGLKSNVAENDSGSSRVLCAWTRSEVEEVQQSMIKVLTAASSETKWVARHTLKGVM CRKASPELLDYSLAHLEGMLAPKNMVVRARCSPTLYDVEFRLEPASSSLQRLHPYYPSKEQIKSDLKLLFDSLINPETMEKFRPSVTRQAVIDSATKLID CKQFMKDFKPEKQLVNYSSSIYVMCHVELFDQSREEPAIPPELLVLPSSATVASLKNEAGKAFQEVYAMCKRLQIDGLLEYGSLEDSFTLKFLIGSTGTV RMKGTCSSKSAVNRYRMERGTEKWTVDCTCGAKDDDGERMLACDSCGVWQHTRCAGIENCDPTPDKFSCIGCKSLLYEKRSDSDAGTEQSSERSSPDKMS TCRGKEAAANKMESNELTLTFSVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	0	1
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10027452 [exp]	5.1	0.7551
AT1G67690			Zincin-like metalloproteases f...		Lus10036925 [exp]	6.5	0.7893
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	10.4	0.8100
AT5G52950			unknown protein		Lus10027565 [exp]	13.0	0.7820
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Lus10009576 [exp]	18.0	0.7471
AT1G04945			HIT-type Zinc finger family pr...		Lus10026116 [exp]	18.2	0.7768
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	19.1	0.7749
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10016691 [exp]	20.4	0.7487
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10022388 [exp]	21.7	0.7609
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	24.2	0.7677

Compare expression of checked genes

Lus10039160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.