Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16370 781 / 0 AAE5 acyl activating enzyme 5 (.1) AT5G16340 771 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G75960 726 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 725 / 0 AMP-dependent synthetase and ligase family protein (.1.2) AT1G21540 723 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G77240 715 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 543 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT1G65890 541 / 0 AAE12 acyl activating enzyme 12 (.1) AT2G17650 540 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G65880 539 / 0 BZO1 benzoyloxyglucosinolate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007369 [exp] 579 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10028375 [exp] 571 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10020787 [exp] 565 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10016011 [exp] 553 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10010956 [exp] 552 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10013773 [exp] 552 / 0 AT5G16370 422 / 1e-146 acyl activating enzyme 5 (.1) Lus10016869 [exp] 540 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037734 [exp] 539 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016870 [exp] 538 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067800 [exp] 887 / 0 AT5G16370 799 / 0.0 acyl activating enzyme 5 (.1) Potri.019G068001 [exp] 854 / 0 AT5G16340 775 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G068100 [exp] 850 / 0 AT5G16340 778 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G067900 [exp] 846 / 0 AT5G16340 777 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G148500 [exp] 839 / 0 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1) Potri.013G096200 [exp] 825 / 0 AT5G16340 779 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G000300 [exp] 820 / 0 AT5G16340 756 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G082000 [exp] 574 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.005G250700 [exp] 567 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.016G034800 [exp] 565 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10039161 pacid=23150516 polypeptide=Lus10039161 locus=Lus10039161.g ID=Lus10039161.BGIv1.0 annot-version=v1.0 ATGCAAGATCTCAAGCCAAGAGCAGCCAATTCCTCCCCGCTAACTCCCCTCGACTTCCTCGATCGGACAGCCACCGTCTACGGCGACTCCCCCTCCGTCA TCTACAACGACACCACCTACACCTGGTCCCAAACCCACCGCCGATGCCTCCAAGTCGCCTCCTCGCTCTCTTCCTCCCACGGAATCCTCCCTGGACAAGT CGTCTCAGTTATCGCCCCCAACACCCCTCCCATGTACGAGCTCCAGTTCGCCGTCCCCATGTCCGGCGCAGTCTTAAACAATCTCAACACCCGCCTCGAC CCCCGCACCATCTCCGTCCTCCTCCTCCACTCCGAATCCAAGCTCGTCATCGTCGATTGCCTCTCCAGGACTCTCATCCTCCAGGCTCTATCTCTATTCC CCGCCGGATCCACCCGACCCGCTCTCGTCCTGATTACAGACGATGACGAGCCTAAAGAAGCCTCATCGATGACCGTCGATTTCGTCTGCACGTATGATGA TCTTGTGGCTGGAGGCGATCCTGAGTTTCAGTGGGTCCGGCCTAGGAGCGAGTGGGACCCAGCGATACTGAATTATACTTCTGGAACCACCTCCGCACCG AAAGGCGTAGTCCACTCGCACAGAGGTTTGTTCTTCATCACGCTCTCTTCGTTAATCGACTGGGCCGTTCCCAAACAGCCCGTCTACCTTTGGGCCCTCC CGATATTCCACGCGAACGGATGGAGCTTCCCGTGGGGGATAGCCGCCGTTGGTGGGACTAACGTCTGTTTCCGGAAAGTCGACGCACCTACCGTATACGG GCTGATCACGCGCCACCGCGTCACTCACATGTGCGGCGCTCCTGTGGTGCTCAACATGCTTACAAACGTCAACAGCCCCACCAAGCTTACCAATCCGGTC CAGATCCTGACAGCCGGAGCTCCGCCTCCGGCAGCAGTCCTTCTCAAGACGGAATCGTTGGGGTTTGTCGTCAGTCACGGGTACGGACTGACGGAGACGG CGGGGCTGGTGGTTTCCTGCGCATGGAAGAATCAATGGGATCGGTTCCCGGCGTCGGAGCGTGCGAGGCTGAAATCGAGGCAAGGAGTGAAGATCGCCGG GTTTACGGAAGTAGACATTGTAGATCCGGAGACTGGAAAGAGCGTGAAGCGTGACGGATCGTCGATCGGAGAAGTGGTTCTTCGGGGCGGGTGTGTGATG ATGGGTTATTTAAAAGATCCGATGGGTACAGCCAAGTGTATGACCGATCAAGGGTGGTTCTACACGGGAGACGTCGGCGTGATCCATACAGACGGATACT TGGAGATAAGGGACAGATCTAAAGACGTGATAATAAGCGGAGGGGAGAACATAAGCAGCGTGGAAGTGGAATCGGTGCTGTACGGTCATCCGGCGGTGAA CGAGGCGGCGGTGGTGGCTAGGCCGGATGAGTTCTGGGGGGAGACGCCGTGTGCTTTTGTGAGCTTGAAACAGGGGAGTCTGGAAACGACCACGGAGAAG GATGTGATTGAGTACTGCAGGGCGAAGATGCCGCATTATATGGTGCCGAAGACGGTGGTGTTCAAAGACGAGCTGCCGAAGACTTCCACCGGGAAGATTC AGAAGTACTTGCTGAGAGATGCAGCCAAGAAAATGGGTGCTTCGAAGCTCAGTCGCCTCTGA
AA sequence Show only first row Show all	>Lus10039161 pacid=23150516 polypeptide=Lus10039161 locus=Lus10039161.g ID=Lus10039161.BGIv1.0 annot-version=v1.0 MQDLKPRAANSSPLTPLDFLDRTATVYGDSPSVIYNDTTYTWSQTHRRCLQVASSLSSSHGILPGQVVSVIAPNTPPMYELQFAVPMSGAVLNNLNTRLD PRTISVLLLHSESKLVIVDCLSRTLILQALSLFPAGSTRPALVLITDDDEPKEASSMTVDFVCTYDDLVAGGDPEFQWVRPRSEWDPAILNYTSGTTSAP KGVVHSHRGLFFITLSSLIDWAVPKQPVYLWALPIFHANGWSFPWGIAAVGGTNVCFRKVDAPTVYGLITRHRVTHMCGAPVVLNMLTNVNSPTKLTNPV QILTAGAPPPAAVLLKTESLGFVVSHGYGLTETAGLVVSCAWKNQWDRFPASERARLKSRQGVKIAGFTEVDIVDPETGKSVKRDGSSIGEVVLRGGCVM MGYLKDPMGTAKCMTDQGWFYTGDVGVIHTDGYLEIRDRSKDVIISGGENISSVEVESVLYGHPAVNEAAVVARPDEFWGETPCAFVSLKQGSLETTTEK DVIEYCRAKMPHYMVPKTVVFKDELPKTSTGKIQKYLLRDAAKKMGASKLSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10039161 [exp]	0	1
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	2.0	0.8669
AT1G80180			unknown protein		Lus10014488 [exp]	2.4	0.8454
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10006071 [exp]	2.8	0.8230
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10021304 [exp]	5.9	0.8083
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018705 [exp]	6.7	0.8247
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	8.5	0.8101
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Lus10018367 [exp]	8.9	0.8028
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Lus10008690 [exp]	11.0	0.7464
					Lus10038116 [exp]	12.0	0.7853
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10010328 [exp]	12.0	0.7974

Compare expression of checked genes

Lus10039161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.