Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23530 323 / 8e-110 ATCXE18 carboxyesterase 18 (.1) AT5G27320 244 / 6e-79 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 223 / 1e-70 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 218 / 3e-68 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 163 / 1e-47 ATCXE20 carboxyesterase 20 (.1) AT1G68620 158 / 1e-45 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 153 / 1e-43 ATCXE17 carboxyesterase 17 (.1) AT2G45600 150 / 1e-42 alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 142 / 1e-39 alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 137 / 2e-37 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013774 [exp] 316 / 1e-106 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10002254 [exp] 237 / 6e-76 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10029541 [exp] 233 / 2e-75 AT5G23530 256 / 2e-84 carboxyesterase 18 (.1) Lus10000928 [exp] 233 / 2e-74 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 231 / 2e-73 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10013771 [exp] 189 / 2e-60 AT5G23530 96 / 4e-25 carboxyesterase 18 (.1) Lus10018963 [exp] 166 / 3e-49 AT5G27320 365 / 3e-127 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002019 [exp] 163 / 1e-47 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10002907 [exp] 163 / 1e-47 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014302 [exp] 367 / 5e-127 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.004G092500 [exp] 348 / 2e-119 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.001G459400 [exp] 343 / 7e-118 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.014G135900 [exp] 235 / 4e-75 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 233 / 3e-74 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G213100 [exp] 232 / 6e-74 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 226 / 1e-71 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G101400 [exp] 168 / 2e-49 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.001G032400 [exp] 165 / 4e-48 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G073000 [exp] 160 / 2e-46 AT2G45600 352 / 2e-121 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10039162 pacid=23150505 polypeptide=Lus10039162 locus=Lus10039162.g ID=Lus10039162.BGIv1.0 annot-version=v1.0 ATGTCATCGTCGCCTTCCTCCTCCGACAATGCCGGGAACCTCCCGCCGCCGCCTCGCCTGCCGTGGAAGGTGAAGATATTCGTATCCGTCCTCTCCTTCG CAGTGGACCTCACCTGCCGACCGGACGGCACAGTCAACCGCCGCCTCATGTCATTCTTCGACCGGAAATCCCCCGCCCGCATCTCCAAAGGCGTCGCCTC CACCGACGTCACCGTCGACCCGCATCGTAACCTCTGGTTCCGCCTCTACTCCCCTACTACAACATCCGCCGCCGATCCTCTCCCTCTCATCGTCTTCTTC CACGGCGGAGGCTTCTGCTTTATGGCAGCCGACTCTAAGCCCTACGACGACTTCTGCCGCCGCCTCGCGGCGGATATCCCAGCAGTCGTCGCGTCCGTCA ACTACCGCCTTGCTCCCGAGCACCGTTGCCCGTCTCAGTACGACGACGGATTCGACGTCCTCAAATTCGTCGACGAGAACTCCCTCGACGATATATTGGA TAAGGCAGGAGTCTCCTGTAAGGTTGATCTGAAAAGGTGCCACGTGGCAGGGGACAGTGCGGGAGGTAATCTGGCCCATCACGTGGCTGTGAAGGCCCAG ACCCACAGCTTCTCGAAGTTGTCTCTGGTGGGGAATATAAGCATCCAGCCATTCTTCGGAGGGGAGGAGAGGACGGCGTCGGAGGTGGATCTCTGTGACG CTCCGTTCGCGACGACGGAGAGGACGGACTGGATGTGGAAGCAGTTCCTTCCGGAAGGTTCGGACAGGGATCACCCGGCGGTGCACGTTTTCGAGGAGGA TATTAGTGAGGTGAAGGGGTTTCCGGCGACGGTGGTGTTCGTGGGAGGTTACGATCCGATCAAGGACTGGCAGAGGAAGTACTACGAGTGGCTGAAGAGA GGCGGGAAAGACGCAAAGCTTGTGGAATATGGGAACGCGATTCACACGTTTTACGCTTACCCTGAGCTGCCGGAGTCGGCTCTGTTCGTCGACGAGGTGA GGCGTTTTGTGAACGTTTAA
AA sequence Show only first row Show all	>Lus10039162 pacid=23150505 polypeptide=Lus10039162 locus=Lus10039162.g ID=Lus10039162.BGIv1.0 annot-version=v1.0 MSSSPSSSDNAGNLPPPPRLPWKVKIFVSVLSFAVDLTCRPDGTVNRRLMSFFDRKSPARISKGVASTDVTVDPHRNLWFRLYSPTTTSAADPLPLIVFF HGGGFCFMAADSKPYDDFCRRLAADIPAVVASVNYRLAPEHRCPSQYDDGFDVLKFVDENSLDDILDKAGVSCKVDLKRCHVAGDSAGGNLAHHVAVKAQ THSFSKLSLVGNISIQPFFGGEERTASEVDLCDAPFATTERTDWMWKQFLPEGSDRDHPAVHVFEEDISEVKGFPATVVFVGGYDPIKDWQRKYYEWLKR GGKDAKLVEYGNAIHTFYAYPELPESALFVDEVRRFVNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039162 [exp]	0	1
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	2.6	0.8499
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009627 [exp]	5.5	0.8379
AT4G34770			SAUR-like auxin-responsive pro...		Lus10038192 [exp]	7.3	0.8356
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008996 [exp]	9.6	0.8349
AT4G38840			SAUR-like auxin-responsive pro...		Lus10025911 [exp]	10.4	0.8326
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10020721 [exp]	11.0	0.7229
AT5G18050			SAUR-like auxin-responsive pro...		Lus10008994 [exp]	11.0	0.8344
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	11.3	0.8195
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009000 [exp]	12.4	0.8305
AT4G29310			Protein of unknown function (D...		Lus10034991 [exp]	15.3	0.7993

Compare expression of checked genes

Lus10039162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.