Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13870 100 / 2e-25 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2) AT3G12430 82 / 5e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12460 82 / 9e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G36110 79 / 8e-18 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12410 73 / 2e-15 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12470 68 / 6e-14 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12440 70 / 8e-14 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G48350 60 / 4e-11 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12420 54 / 8e-09 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G06450 53 / 2e-08 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013769 [exp] 423 / 1e-152 AT4G13870 105 / 4e-27 Werner syndrome-like exonuclease (.1.2) Lus10029478 [exp] 139 / 3e-41 AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039591 [exp] 133 / 7e-39 AT3G12410 86 / 1e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029479 [exp] 122 / 2e-34 AT2G36110 87 / 4e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10043049 [exp] 110 / 1e-29 AT2G36110 121 / 4e-34 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022556 [exp] 89 / 6e-21 AT4G13870 246 / 1e-80 Werner syndrome-like exonuclease (.1.2) Lus10036491 [exp] 64 / 4e-12 AT3G11770 64 / 4e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10010357 [exp] 63 / 1e-11 AT3G11770 66 / 7e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10016641 [exp] 54 / 1e-09 AT4G13870 108 / 2e-30 Werner syndrome-like exonuclease (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G028700 [exp] 260 / 1e-88 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2) Potri.006G031400 [exp] 258 / 2e-87 AT3G12410 101 / 2e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.011G116000 [exp] 146 / 7e-44 AT3G12410 91 / 2e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.017G059200 [exp] 86 / 9e-20 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.019G021900 [exp] 74 / 9e-16 AT3G11770 77 / 3e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.013G049000 [exp] 71 / 5e-15 AT5G06450 / Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028400 [exp] 58 / 4e-10 ND / Potri.002G185500 [exp] 58 / 5e-10 AT3G12410 45 / 1e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028501 [exp] 50 / 2e-07 ND / Potri.005G020000 [exp] 47 / 3e-06 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10039164 pacid=23150273 polypeptide=Lus10039164 locus=Lus10039164.g ID=Lus10039164.BGIv1.0 annot-version=v1.0 ATGCCACCGATCAGCATCATAGACCACCGTCTCCCCGACGAGACTCACAATCTCTACGATGTCACTTTCTTCACCGACGAAATCCACACTCTCCTCACCC AATCCCCGGGACCCCTCCACCAATGGCTCCTCGAAACCACTCGACAGCAGCAGAGCTCCGGCTCCGCAGTCGCCGTCGTAGTCGGCCTGGACGTGGAGTG GCGCCCGAACTTCAGCCGCAACCACAACAATCCGATCGCAACTCTCCAGCTCTGCGTGGGCGGCAGGTGTGTGATCTTCCAGCTCATCCACTCCCCGTCC ATTCCGCAGTCCCTCTTCGATTTCCTTCAGAACAAGGACTTTGTCTTCGTCGGAGTCGGAATCGAGAACGACGTGGAGAAGCTGATCGAGGATTACGGGC TGACTGTGGCGAACTCGGTCGATCTGAGGGGTCTCGCAGCGGAGAAGCTGGGAGACAAGGCGCTGAAGAACTCGGGGCTGAAGCAGCTGGCCAGAGAGGT GTTGGGGAAAGAGATCGAGAAGCCGAAAAGGGTTTCGATGAGTAGGTGGGACAATCTGTGGCTCACTCCACTCCAGGTCCAATATGCTTGCGTTGATGCC TTTTTATCTTATAAGATTGGAGACACTCTCAATGCTGGTTCTGCTGTTGCTCCTGCCGGTGGAGCGTATTAG
AA sequence Show only first row Show all	>Lus10039164 pacid=23150273 polypeptide=Lus10039164 locus=Lus10039164.g ID=Lus10039164.BGIv1.0 annot-version=v1.0 MPPISIIDHRLPDETHNLYDVTFFTDEIHTLLTQSPGPLHQWLLETTRQQQSSGSAVAVVVGLDVEWRPNFSRNHNNPIATLQLCVGGRCVIFQLIHSPS IPQSLFDFLQNKDFVFVGVGIENDVEKLIEDYGLTVANSVDLRGLAAEKLGDKALKNSGLKQLAREVLGKEIEKPKRVSMSRWDNLWLTPLQVQYACVDA FLSYKIGDTLNAGSAVAPAGGAY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10039164 [exp]	0	1
AT4G00860		AT0ZI1, ATOZI1	Arabidopsis thaliana ozone-ind...		Lus10007542 [exp]	2.0	0.9497
AT1G28120			unknown protein		Lus10026630 [exp]	2.6	0.9521
AT4G30010			unknown protein		Lus10001443 [exp]	3.3	0.9313
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	3.5	0.9438
AT5G58710		ROC7	rotamase CYP 7 (.1)		Lus10040666 [exp]	3.6	0.9294
AT2G03190		ASK16	SKP1-like 16 (.1)		Lus10031747 [exp]	4.9	0.9353
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10040207 [exp]	5.3	0.9358
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	6.0	0.9435
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	7.7	0.9311
AT3G26340			N-terminal nucleophile aminohy...		Lus10006426 [exp]	8.4	0.9324

Compare expression of checked genes

Lus10039164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.