Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013768 [exp] 350 / 9e-112 AT1G65780 69 / 4e-11 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035776 [exp] 175 / 1e-50 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G142960 [exp] 178 / 1e-51 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 177 / 2e-51 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 177 / 2e-51 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039165 pacid=23150709 polypeptide=Lus10039165 locus=Lus10039165.g ID=Lus10039165.BGIv1.0 annot-version=v1.0 ATGCTGAACTGGGAGGGAAGCAATCACGCACAAGCGATTTCCAAAGGCGTTGAGTTCAGGTTCAAGGATATAAGGTCTCTATTGTATGCAACGTTTATAC TTAATTCAGGACGTTTAGGAGCTTCCCGTGGCACTGCAAAGCAACAACTTTCTGAGGTTTTTCAGCTGAGTCAGAACTTTCGAACGCATGCTGAGGTTCT TAAGCTAGCTCAAACTGTTATTGACTTGATTTATTATTTCTTCCCTCACTCGATTGATGAACTGAATCCGGAGATGAGTCATGTGAATGGGGAGATGCCC GTGCTGCTTCATTCTTTGAAGCATAAAAGCATGTTCTACTGCATGTCTGATGTTTACTTTGGTGCTGACAAGAAAAGTTGGGAGTTTGGGGCTGAGCAGG TAATATTATTAAGAGATGAAGAAGTCAAAAACAATGTTGTATGCCAAGTGGGCAAGCAAGCTCTTGTTCTCACGATATTGGAGTGCAAAGGCTTAGAGTT TGAGGATGTCTTGCTGTATGATTTTTTTGGTTCCTCTCCTGGGCCAGATCAGTGGGAGGTACTAAATATCCTGAGCATTATACAGAGAATATCCTGA
AA sequence Show only first row Show all	>Lus10039165 pacid=23150709 polypeptide=Lus10039165 locus=Lus10039165.g ID=Lus10039165.BGIv1.0 annot-version=v1.0 MLNWEGSNHAQAISKGVEFRFKDIRSLLYATFILNSGRLGASRGTAKQQLSEVFQLSQNFRTHAEVLKLAQTVIDLIYYFFPHSIDELNPEMSHVNGEMP VLLHSLKHKSMFYCMSDVYFGADKKSWEFGAEQVILLRDEEVKNNVVCQVGKQALVLTILECKGLEFEDVLLYDFFGSSPGPDQWEVLNILSIIQRIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039165 [exp]	0	1
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10015126 [exp]	12.5	0.7673
AT5G10630			Translation elongation factor ...		Lus10026953 [exp]	20.3	0.7113
					Lus10012594 [exp]	33.5	0.7109
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10043172 [exp]	37.5	0.7108
					Lus10005426 [exp]	55.8	0.6469
AT2G36080	B3	ABS2, NGAL1	AP2/B3-like transcriptional fa...		Lus10029431 [exp]	66.6	0.6791
AT1G56310			Polynucleotidyl transferase, r...		Lus10031404 [exp]	77.6	0.6671
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	91.0	0.6672
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	94.6	0.6648
AT5G16920			Fasciclin-like arabinogalactan...		Lus10039146 [exp]	110.2	0.6443

Compare expression of checked genes

Lus10039165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.