Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50240 880 / 0 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT3G08720 181 / 4e-49 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 176 / 2e-47 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT3G53930 172 / 9e-45 Protein kinase superfamily protein (.1.2) AT5G18700 172 / 8e-44 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) AT2G45490 160 / 1e-43 ATAUR3 ataurora3 (.1) AT3G61960 165 / 6e-43 Protein kinase superfamily protein (.1.2) AT2G37840 166 / 1e-42 Protein kinase superfamily protein (.1.2) AT5G25110 160 / 9e-42 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT3G06030 162 / 1e-41 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013766 [exp] 1481 / 0 AT1G50240 1521 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10025213 [exp] 179 / 2e-46 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10030182 [exp] 176 / 4e-46 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005135 [exp] 173 / 3e-45 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012799 [exp] 171 / 2e-43 AT5G18700 960 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10012893 [exp] 162 / 7e-43 AT5G58380 446 / 3e-154 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10033979 [exp] 165 / 3e-42 AT5G18700 503 / 4e-162 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10020580 [exp] 153 / 2e-41 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10034212 [exp] 157 / 4e-41 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G052500 [exp] 1056 / 0 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Potri.006G109600 [exp] 184 / 4e-50 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 180 / 7e-49 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.008G195800 [exp] 177 / 2e-45 AT5G18700 1833 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.016G104900 [exp] 171 / 5e-44 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G031800 [exp] 172 / 6e-44 AT5G18700 1791 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.002G177900 [exp] 160 / 2e-42 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.006G263500 [exp] 160 / 2e-42 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.014G107000 [exp] 162 / 1e-41 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G181000 [exp] 161 / 3e-41 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10039167 pacid=23150568 polypeptide=Lus10039167 locus=Lus10039167.g ID=Lus10039167.BGIv1.0 annot-version=v1.0 ATGGGATTGGAGAGCTACCATGTGATAGAGCTAGTTGGGGAAGGATCTTTCGGAAAAGTATACAAAGGCCGGCGCAAGTGCACGGGCCAGACTGTTGCGA TGAAGTTTATAATGAAACAAGGGAAATCCGAGAAGGATGTACATAATCTGAGGCAGGAAATTGAGATTTTGAGAAAGTTAAAGCATGAAAACGTTATTGA AATGCTAGACTCTTTTGAGAGTCCTCAAGAGTTCTGCGTTGTGACTGAATTTGCACAGGGTGAGTTGTTTGAGATACTAGAGGACGATAAATGCCTACCT GAAGAACAGGTCCAGGCTATTGCAAAGCAACTGGTAAGAGCATTGTACTATTTACACTCCAACAGAATCATTCACCGAGATATGAAGCCCCAGAACATAC TTATCTGTTCTGATTCAATTGTTAAGCTTTGCGATTTTGGGTTTGCACGCGCAATGTCTCAAAACACCGTGGTTCTGCGATCTATAAAAGGAACACCACT ATACATGGCTCCTGAATTGGTGCGAGAACAACCATACAACCACACTGCGGATTTGTGGTCGCTTGGAGTTATATTGTACGAATTGTTTGTTGGCCAGCCA CCATTTTACACCAATTCTGTATATGCTCTCATCAGGCACATTGTAAAGGATCCAGTGAAATATCCTGATAATATGAGCCCAGATTTTAAAAGCTTCCTTA AAGGATTGCTCAATAAGTCACCACAAAATCGGTTGAGTTGGCCTCATCTTCTGGAACACCCATTTGTCAAAGAAAATTCAGATGAATTGGAGTCCAGGGA GGTGCCATTTGCAATTACTCCAGCTAGTGAACCAGTCCCAGTTACCGACAGAAAACCCAGCCCAAGATCAGCTGATCTAGTTGGATCTTCTCCTGATGTT GCAATGAACACTTCGCCAGTGCCTGTACATGAGGATTTTCCAGGATTTGCAAGTCCCAATGATGTCAAACACTCGGGTAACCACACATTGGACAGATTGG AAAACAACTCGCGAACAGTTAAAGGTGCACAAGTCATTGGTAAAGATAGTGAAGCATTGACGCAAATCTTGCTTCCGCTAAGAAGGTGGTCAAAAGACTC TAATAATACCTGCAGGGATCAAGATGTTATTTGTGCAAACCAATCTATGCGAATCCTTTCAAACTTAGCTGCAGCTGGTGCTTTCCAGTCTAGCGGACTA CTACATGAAATATTAGGTGAACTTCTCGAGTTCACAACCATTACAATCAGCCTGAAGTCATCTGCATTCAATGAAGTAATAGCAAAGTTGTTAGACAGTG GAGGAAGTGGCATTATAAGTTCACATTTCACAACACACTGGGTTGCATTGACTGAAATTTTTCCCCAGGTTATCAGCACCATTGAGGACTCTTCAGGAAG GATTGTCTATGAGGCCAGCACTTGTATTACATCCGTATTATCAAAAGTAGCAAGCTCTGTTAAAGCAAGTTCTTCGAGTTCAGGTTCAGATACAGTTAAT ACTCCTTTGGTGATCGAGGCATCAAAGCAGATCCTGGATCGAGCAAAGACGTGTGGCTTAATGGAGCATTTGTGTGGTTGTTTAGCGACAGCAGGCCAAG GCCTCATCTCTGGTTCGTCCACTTTGTTGCGTGCCGCTTGTGAAGCTTGTAAGGCTATTGGTTCATTCATAGACGGAGTGGAAGCTCTGTTCATGAAAGC AAATGTTGTCTCATTTCCTGTTACTGCTTTCCGGAGTTGTTCATTGCATCGGCTTCAGATTCAGGACCATGAAAGAGTTTCATTGGTAGGAACAGATTCA GCAAGAATGATTGATGCATTTACAAGAGCTTTCTTGAGATCAAAAGCTGTACAAGTAGCTATCTCCTATTGTCTACGTCAGCGTGTAGAGACTTCACTTC TGGCTACAATACAGATCCTGTCAAGGTGCTGCCTACAAAGTGCAATTATCCCTGGTGTTCTTTGTGGATTACCCACTTCTCTTCCTGCTACAACTGTTGT CAGTGGTGGAGGGGACGGCAGCATTATTTCAGAGATATTCTCCATTCTCTCGTTATGTGCATCATTGTTGAGTAAAGATTCTCAAGCAGGTGAAACAGCA AAGACGAAATTAGCGAATCCTTCTATCCTAGCTACGAATTCATGCCTACTCCTCACAATAGTTGCTCAGTGTTTGAAATCATCCGGAAGAAATTCTGCAC TGTTTCTGTTAACCACCTCTATTAAAAAACAGCAATCCCGACTTTCAGTTCTTGCTCATCATTTTTCTCCTGATGATGGAATAAAGGCTTCGCTGCACCC ACATTCTGCATCAGCCATGTTGGCTCTTGCTTGTATTCTATCCCTTGAGTGTGGTGCTTCTGTTGAATCTTCAATCTCTGAAATCGCAGTTCCTTTGATT CCTCGAACGGGAACTCTTTGTGAACAACTTAAAGTATTGGATGGAAATGGATCAAGGCCCCATAATGGTGCTCTCTCATATTGGCATGGCCTTCGGGATG GATGTGTTGGCTTGCTAGGATCAAGAACGGGATGGGGGGGTCAATAG
AA sequence Show only first row Show all	>Lus10039167 pacid=23150568 polypeptide=Lus10039167 locus=Lus10039167.g ID=Lus10039167.BGIv1.0 annot-version=v1.0 MGLESYHVIELVGEGSFGKVYKGRRKCTGQTVAMKFIMKQGKSEKDVHNLRQEIEILRKLKHENVIEMLDSFESPQEFCVVTEFAQGELFEILEDDKCLP EEQVQAIAKQLVRALYYLHSNRIIHRDMKPQNILICSDSIVKLCDFGFARAMSQNTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQP PFYTNSVYALIRHIVKDPVKYPDNMSPDFKSFLKGLLNKSPQNRLSWPHLLEHPFVKENSDELESREVPFAITPASEPVPVTDRKPSPRSADLVGSSPDV AMNTSPVPVHEDFPGFASPNDVKHSGNHTLDRLENNSRTVKGAQVIGKDSEALTQILLPLRRWSKDSNNTCRDQDVICANQSMRILSNLAAAGAFQSSGL LHEILGELLEFTTITISLKSSAFNEVIAKLLDSGGSGIISSHFTTHWVALTEIFPQVISTIEDSSGRIVYEASTCITSVLSKVASSVKASSSSSGSDTVN TPLVIEASKQILDRAKTCGLMEHLCGCLATAGQGLISGSSTLLRAACEACKAIGSFIDGVEALFMKANVVSFPVTAFRSCSLHRLQIQDHERVSLVGTDS ARMIDAFTRAFLRSKAVQVAISYCLRQRVETSLLATIQILSRCCLQSAIIPGVLCGLPTSLPATTVVSGGGDGSIISEIFSILSLCASLLSKDSQAGETA KTKLANPSILATNSCLLLTIVAQCLKSSGRNSALFLLTTSIKKQQSRLSVLAHHFSPDDGIKASLHPHSASAMLALACILSLECGASVESSISEIAVPLI PRTGTLCEQLKVLDGNGSRPHNGALSYWHGLRDGCVGLLGSRTGWGGQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039167 [exp]	0	1
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10025046 [exp]	1.0	0.9872
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10012048 [exp]	2.8	0.9737
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Lus10006990 [exp]	3.2	0.9659
AT5G23910			ATP binding microtubule motor ...		Lus10039243 [exp]	3.9	0.9698
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10013766 [exp]	4.5	0.9683
AT4G14180		ATPRD1	putative recombination initiat...		Lus10002081 [exp]	5.7	0.9416
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	6.5	0.9649
AT5G48310			unknown protein		Lus10025189 [exp]	7.5	0.9643
AT4G15890			binding (.1)		Lus10001471 [exp]	8.4	0.9579
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10010024 [exp]	9.0	0.9635

Compare expression of checked genes

Lus10039167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.