Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50240 537 / 2e-180 FU FUSED, Protein kinase family protein with ARM repeat domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013766 [exp] 752 / 0 AT1G50240 1521 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G052500 [exp] 598 / 0 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10039168 pacid=23150674 polypeptide=Lus10039168 locus=Lus10039168.g ID=Lus10039168.BGIv1.0 annot-version=v1.0 ATGTCTGAAGCTCACCTCAAACTTGTCAAAGGCTGGGGTGGACCGGGCGGAGGAAAGGATGGAGTAAGAGATCTGATAAATTCTGCCATTGATCTTTTAG CCTTTCCTTTTGTTGCTATTCAGAATGCTCCTGGTCTGCCTTCTGCCAATGCATCTACGAACAGTGGCTTACTTCTCAACACGGGTTCACCTGGGGGTAA TATAGGCATGGAAGATCGGAGCATGGTTAAAGCAATAGAGGAAGATTTGGGGAAGTATGTAAAAATCCTGTTGGAGGTTGGAGTACCTAGCATTATTCTT CAGTGTCTTAATCATGTGGAAACTAAAGATTTGGGTAGGCCCGTTGCATTTCTCGCAAAAATGACAAGCCACAAACCTCTAGCCGTTCATCTAGTTGGCA GAGGCTTACTGGATCCAAGTAGAGTTAAAAGACTACTTGATGCTTCATGTCCGATTGAGGTTACACTGGATATCCTTATGATCATCTCCGATTTATCTCG GATGGACAAGGGTTTCTATGAACACATCGACAGAGCTTCTGTTTTAGAGACATTGAAGGATTTCCTGATACATGAAGATCCCAACATCCGTGCAAAAACG TGCAGTGCTCTTGGCAACATGTGCCGCCATAGCTCTTACTTCTATTCTCTGCTAGAAAGGCATCACATAGTTGCTCGGCTCATCGATCGATGCGCAGACC CAGATAGACGCACTAGAAAGTTCGCCTGTTTTGCTATTGGGAACGCAGCCTACTATAACGACAAGTTGTACGATGAGCTCAGACGATCCATACCCCAATT AGCGTACTTGCTGCTCTCGAATGAGGAAGACAAGACGAAAGCCAATGCTGCCGGTGCTTTAAGCAATCTCGTCCGCAACTCGAGCAGACTCTGCGACGAC ATAGTCTCCAAAGGAGCAATGCAGGCTTTGCTGAAACTAGTGGCGGACTGTGCAACGATAGCCCTCAAGGTTCCGAACAGGAGAGACGGGTTGAACGAGT CGCCGTTGAAGATAGCGATGTTTTCTTTGGCAAAGATGTGCGCACACACGCCATGCCGAGAGTTCCTCCGTTCGTCGGAGCTGTTTCCGGTGATCGGGCA GCTCAGGCAATCCCCGGAGTCCACCATTGCCAACTATGCTACCCTTATCATTGGTAAAGTCAGTGGCGGGTGA
AA sequence Show only first row Show all	>Lus10039168 pacid=23150674 polypeptide=Lus10039168 locus=Lus10039168.g ID=Lus10039168.BGIv1.0 annot-version=v1.0 MSEAHLKLVKGWGGPGGGKDGVRDLINSAIDLLAFPFVAIQNAPGLPSANASTNSGLLLNTGSPGGNIGMEDRSMVKAIEEDLGKYVKILLEVGVPSIIL QCLNHVETKDLGRPVAFLAKMTSHKPLAVHLVGRGLLDPSRVKRLLDASCPIEVTLDILMIISDLSRMDKGFYEHIDRASVLETLKDFLIHEDPNIRAKT CSALGNMCRHSSYFYSLLERHHIVARLIDRCADPDRRTRKFACFAIGNAAYYNDKLYDELRRSIPQLAYLLLSNEEDKTKANAAGALSNLVRNSSRLCDD IVSKGAMQALLKLVADCATIALKVPNRRDGLNESPLKIAMFSLAKMCAHTPCREFLRSSELFPVIGQLRQSPESTIANYATLIIGKVSGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039168 [exp]	0	1
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	2.0	0.9575
AT5G42330			unknown protein		Lus10013229 [exp]	2.4	0.9567
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Lus10012898 [exp]	5.5	0.9361
AT5G43020			Leucine-rich repeat protein ki...		Lus10024803 [exp]	5.9	0.9445
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10011306 [exp]	6.6	0.9354
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	7.3	0.9467
AT1G16630			unknown protein		Lus10006845 [exp]	7.5	0.9535
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030657 [exp]	8.5	0.9290
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10038729 [exp]	9.6	0.9518
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	11.6	0.9484

Compare expression of checked genes

Lus10039168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.