Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19780 814 / 0 TUA5 tubulin alpha-5 (.1) AT5G19770 814 / 0 TUA3 tubulin alpha-3 (.1) AT1G50010 794 / 0 TUA2 tubulin alpha-2 chain (.1) AT1G04820 794 / 0 TOR2, TUA4 TORTIFOLIA 2, tubulin alpha-4 chain (.1) AT4G14960 792 / 0 TUA6 Tubulin/FtsZ family protein (.1.2) AT1G64740 787 / 0 TUA1 alpha-1 tubulin (.1) AT1G75780 348 / 2e-116 TUB1 tubulin beta-1 chain (.1) AT5G62690 347 / 6e-116 TUB2 tubulin beta chain 2 (.1) AT5G62700 347 / 6e-116 atgcp3, TUB3 tubulin beta chain 3 (.1) AT5G12250 346 / 2e-115 TUB6 beta-6 tubulin (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013765 [exp] 832 / 0 AT5G19770 914 / 0.0 tubulin alpha-3 (.1) Lus10005705 [exp] 797 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10020281 [exp] 797 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10031032 [exp] 791 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10035422 [exp] 791 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10002000 [exp] 348 / 2e-116 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10035497 [exp] 348 / 2e-116 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10036069 [exp] 348 / 3e-116 AT5G12250 914 / 0.0 beta-6 tubulin (.1) Lus10026813 [exp] 348 / 3e-116 AT5G12250 867 / 0.0 beta-6 tubulin (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G220300 [exp] 807 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.019G036000 [exp] 803 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.001G004600 [exp] 802 / 0 AT5G19780 809 / 0.0 tubulin alpha-5 (.1) Potri.013G056800 [exp] 798 / 0 AT5G19780 811 / 0.0 tubulin alpha-5 (.1) Potri.002G111900 [exp] 797 / 0 AT1G50010 858 / 0.0 tubulin alpha-2 chain (.1) Potri.001G289500 [exp] 795 / 0 AT4G14960 855 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.009G085100 [exp] 794 / 0 AT1G50010 852 / 0.0 tubulin alpha-2 chain (.1) Potri.017G081000 [exp] 791 / 0 AT4G14960 852 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.006G095000 [exp] 348 / 2e-116 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.009G040200 [exp] 348 / 4e-116 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0442 [flax] [poplar] Tubulin_C PF03953 [flax] [poplar] Tubulin_C Tubulin C-terminal domain CL0566 [flax] [poplar] Tubulin PF00091 [flax] [poplar] Tubulin Tubulin/FtsZ family, GTPase domain
Representative CDS sequence Show only first row Show all	>Lus10039169 pacid=23150345 polypeptide=Lus10039169 locus=Lus10039169.g ID=Lus10039169.BGIv1.0 annot-version=v1.0 ATGAGGGAGATCATTAGCATACACATCGGCCAGGCCGGAATTCAGGTCGGCAACTCCTGCTGGGAGCTTTACTGCCTCGAACATGGCATCCACCCTGATG GGACCATGCCTAGTGATACCACTGTAGGAGGTGGACACGATGCTTTCAACACCTTCTTCAGCGAGACTGGTGCTGGGAAACACGTTCCTAGAGCTATTTT CCTTGACTTGGAGCCCACAGTTATTGATGAAGTCAGGACTGGGACGTATCGCCAACTTTTCCATCCTGAGCAGCTTATTTCTGGCAAGGAAGATGCTGCC AATAACTTTGCTAGAGGCCACTACACCGTTGGAAAGGAAATAGTGGATTTGTGCCTTGACCGAGTCAGGAAACTGGCTGATAACTGCACTGGGCTACAAG GTTTTTTGGTTTTCAACGCTGTTGGTGGTGGAACTGGATCTGGTTTGGGATCTCTATTGCTAGAACGCCTGTCTGTTGATTATGGAAAGAAATCAAAGCT TGGATTCACAATTTATCCTTCTCCTCAGGTCTCAACTGCAGTTGTAGAGCCATATAACAGTGTACTTTCAACTCATTCCCTTCTTGAGCACACTGATGTT GCAGTTCTATTGGATAATGAAGCTATATACGACATCTGCAGAAGGTCCTTGGACATTGGACGACCTACTTACACAAATCTGAACCGATTGATATCCCAAA TCATATCATCCTTGACTACTTCATTGAGGTTTGATGGTGCCATTAACGTTGACATCACAGAGTTCCAGACCAATCTTGTCCCATACCCTCGTATCCATTT CATGCTTTCATCATATGCCCCGGTCATCTCAGCTGAAAAGGCTTACCATGAGCAATTATCAGTCCCTGAGATCACAAATGCAGTGTTCGAGCCTTCCAGT ATGATGGCTAAGTGTGATCCCAGGCATGGAAAGTACATGGCCTGCTGTTTGATGTACAGAGGAGACGTAGTGCCCAAGGATGTCAACGCTGCAGTTGGCA CAATCAAAACCAAGAGGACAGTTCAGTTTGTTGACTGGTGCCCTACTGGCTTCAAGTGCGGTATTAACTACCAGCCTCCAACTGTGGTACCCGGCGGTGA TCTGGCCAAGGTGCAGCGAGCAGTATGCATGATCAGCAACAACACAGCAGTTGCGGAGGTGTTCTCACGGATCGACCATAAATTTGACCTCATGTATTCA AAGAGGGCGTTTGTCCACTGGTACGTGGGTGAGGGCATGGAAGAGGGAGAATTCTCAGAGGCACGTGAGGATCTGGCTGCCCTGGAGAAGGACTACGAGG AGGTCGGAGCCGAAGGTGGCGACGATGATGAAGAGGAACCCGAAGACTATTGA
AA sequence Show only first row Show all	>Lus10039169 pacid=23150345 polypeptide=Lus10039169 locus=Lus10039169.g ID=Lus10039169.BGIv1.0 annot-version=v1.0 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTTVGGGHDAFNTFFSETGAGKHVPRAIFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAA NNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDV AVLLDNEAIYDICRRSLDIGRPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYS KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDDEEEPEDY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10039169 [exp]	0	1
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	1.4	0.9170
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	2.4	0.8996
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10017889 [exp]	2.6	0.8779
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	3.9	0.8989
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10032241 [exp]	4.9	0.8761
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	6.0	0.8959
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10030758 [exp]	6.0	0.8973
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	6.3	0.8963
AT5G48460			Actin binding Calponin homolog...		Lus10038235 [exp]	8.3	0.8508
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10033711 [exp]	9.2	0.8656

Compare expression of checked genes

Lus10039169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.