Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35910 771 / 0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) AT1G54440 579 / 0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT2G32415 211 / 6e-57 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT2G25910 45 / 0.0002 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005691 [exp] 1493 / 0 AT5G35910 814 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020300 [exp] 1185 / 0 AT5G35910 477 / 1e-157 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020293 [exp] 870 / 0 AT5G35910 691 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10015114 [exp] 207 / 2e-55 AT2G32415 1089 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10031563 [exp] 207 / 5e-55 AT2G32415 1039 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10020301 [exp] 78 / 4e-17 AT5G35910 61 / 6e-12 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G038701 [exp] 899 / 0 AT5G35910 846 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.013G062800 [exp] 894 / 0 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.002G229000 [exp] 206 / 4e-55 AT2G32415 1050 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Potri.015G009500 [exp] 44 / 0.0004 AT5G24340 679 / 0.0 3'-5' exonuclease domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF00570 [flax] [poplar] HRDC HRDC domain CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease CL0219 [flax] [poplar] PF08066 [flax] [poplar] PMC2NT PMC2NT (NUC016) domain
Representative CDS sequence Show only first row Show all	>Lus10039170 pacid=23150727 polypeptide=Lus10039170 locus=Lus10039170.g ID=Lus10039170.BGIv1.0 annot-version=v1.0 ATGGACGTCGATCAACCGAATCAACCACCACAGTCCCAATCCCAAACACTAACCACATTAACCACCGGGCCTCTCTCCTCGTCACTCTCATCCCTCGCCG CATCTTCCCGCGCATTCCCTTCCAACAAGGACTTCCACTTCTACAACAACTTCGAGGAGTTCAAACACCCCGTCAACCGAATCTCGTCCAAGTCTCAGTC CCTCCTCGGTTCAATCGGGGTCTCGGGGTCCGTGTTCAAGCAGAGTTACACATTCCCAACCGACATTGACTGCGACGGGGCATCCGATTGGCTCGTCAAC GTGAACGACGAAGTGCTTGAACGGTTCGACTCGTCGGTTGACGAGTTTGAGACGGCGCGGAAGGGGCAGGAGGAGGTGAGCGCGAAGGGGGCAATGGATG AAGACGGGTTTCAGACGGTTTACGGTAGGAATAATAAGAAGAAGAGTAACGTCTGGATTAATCCCAATAGCGGATTAGCTGCGGCGGGGAGTTCGGGTGG TGAAATGGGAGTTAAGGTTGCTGATAAGAAGGGGAATGTTGGCGGGAAAGCGAAGGTCCCGTTTCATATTCCGTCGATTAGGAGGCCGCAGGAAGAGTAT AGTATCTTGGTGGATAATTCGAACCAGGCGTTTGAGCATGTCTGCTTCGAGGAGAGTGCTAATGGGACGCTATTTGTTCATCCCTTGGAGAAGCTTTCTG TTTTGGACTTTGTGGACAAAGATGCTGGTGATGTTGAACCGGTGGTTCCACCTGCGGTAGAGAGTACCCCATTCAAGCTCGTGGAGGATGTCAAGGATTT GAAGGAGATGGCAGCTAAACTGCGTGCTGTCAATGAATTTGCGGTTGATTTGGAGCACAATCAATATCGTTCTTTTCAAGGATTAACATGCCTGATGCAA ATTTCAACAAGAACTGAGGATTTCATTGTTGACACTTTAAAGCTCCGAATACACGTTGGTCCTCATCTCAGGGAACTTTTCAAGGATCCGACCAAAAAAA AGGTCCTGCATGGAGCAAATTCAGACATATTGTGGCTTCAAAGGGGCTTTTGGATATATGTGTGCAATATGTTTGATACAGGACAGGCCTCCCGAGTACT GAAAATGGAGAGGAACAGTTTGGAGCATCTTTTGCATCATTTTTGCGGAGTTTTTGCTAACAAAGAATACCAGAATGCAGATTGGAGACTACGTCCTCTC CCTGTTGAGATGATTAGATATGCTAGAGAAGACACCCATTATCTGCTATACATCTATGATCTAATGAGAAGCTTGTTGCGTTCATTGCCTAAAGAAACTG AAAATTCTGATACGCCACTGGTGGAGGTGTACAAACGGAGTAATGATATTTGCATGCAGCTATATGAGAAGGATCTTCTTACGGAAAATTCATATATGCA TATGTATGGGTTGCCAAGCGCTAACTTCAGTGCTCATCAGCTTGCGATTGTTTCAGGCCTCTATGAATGGAGAGATGCTATAGCACGAGCAGAAGATGAG AGTACAGGTTATATATTACCAAACAAAGTTCTGCTTGAAATCGCCAAGCAGATGCCTGTAACAACCAGCAAGTTGCGTCGCGTACTCAAATTGAATCACC AGTATATTGAGCGGCATCTCAGTTCTGTCGTTCAAGTTGTTCGACATCAAATGCAAAAAGCTGCTGCATTTGAAACTGCTGTTCAGCAATTGAAGGAAGT GGCCTTGGAAATGGCCTCGCGACGAGATAACGTTGAAGCAAATGATGATTCGAAGGTTCTCGATACACAAACTGCCGCTGCCATAGAAGCTCCAAATGTT GTAGCACAAGAAAACATGCCAGTCAGTTCTTCACAGGCTGAGAAGAAACATTTGGACGGTGCAGCCAATGTCAATCATGTTCATGAAAATGGGAAAACAA AGTCTTCTACATCGAAAAACCATAGTGCCGACACGTCTCCTGCTGCAAAGGTTACAGGAGCTACAGTTCAGGTGCAAAAGAAGCAAGGCTGCATCTTCGG ATCAATGCTTGGAAATGCAATACCGAAGAAGCGAGCTGATACAGATGATAAGGATAAGAGAGACACTACGTTAGAAAAGATCAAATCGTCGGTCAGTCTT CCATTCCACTCATTTGCAGGAGGAAACGAGCAACAATCAAAACCAGCTGTGGAAGAAGCGACAGCTAGGATTTCGCAAGATGCACATCCTGAAAAATCTC CAGCTGCAAAGGACGTCATAATGTTGGACTCGGAGTCGAGCGATGAAGAACTGGATGATTCGGAAATGAAGGAATCAGCAGAGTCTCCATCCAAAGGAGA CAATGAAACTGAACCGGTTACTCTATCCGATCTGTCCTCGAGCTTCGACAAGTGCTGCCGGTCTATAGACAAGAAGAGTGGAGTTGATAAGTCTACTCAG GGATCAAGCGATGTGCCCCAGTTGAAGCCGTTTGATTACGCTGCTGCTGCCGAGAAGCTGCTGAAGTTTGAGAAGGATCCCAAGAAACCAGACGGGGCCA TTGATGGGAAGAAATCGTCGTCAGTGGATCAGTCGTGTAAGAAGAGAAATTCTGCCGGCGGTGGAAGCGTTGAGAAGGAGGACGATAGGGATGAATTCCG ACAGGGTAGAAGGCGGCAGGCTTTTCCGGCCAGCGGCAACCGTAGCTTAAGCTACCGTTAA
AA sequence Show only first row Show all	>Lus10039170 pacid=23150727 polypeptide=Lus10039170 locus=Lus10039170.g ID=Lus10039170.BGIv1.0 annot-version=v1.0 MDVDQPNQPPQSQSQTLTTLTTGPLSSSLSSLAASSRAFPSNKDFHFYNNFEEFKHPVNRISSKSQSLLGSIGVSGSVFKQSYTFPTDIDCDGASDWLVN VNDEVLERFDSSVDEFETARKGQEEVSAKGAMDEDGFQTVYGRNNKKKSNVWINPNSGLAAAGSSGGEMGVKVADKKGNVGGKAKVPFHIPSIRRPQEEY SILVDNSNQAFEHVCFEESANGTLFVHPLEKLSVLDFVDKDAGDVEPVVPPAVESTPFKLVEDVKDLKEMAAKLRAVNEFAVDLEHNQYRSFQGLTCLMQ ISTRTEDFIVDTLKLRIHVGPHLRELFKDPTKKKVLHGANSDILWLQRGFWIYVCNMFDTGQASRVLKMERNSLEHLLHHFCGVFANKEYQNADWRLRPL PVEMIRYAREDTHYLLYIYDLMRSLLRSLPKETENSDTPLVEVYKRSNDICMQLYEKDLLTENSYMHMYGLPSANFSAHQLAIVSGLYEWRDAIARAEDE STGYILPNKVLLEIAKQMPVTTSKLRRVLKLNHQYIERHLSSVVQVVRHQMQKAAAFETAVQQLKEVALEMASRRDNVEANDDSKVLDTQTAAAIEAPNV VAQENMPVSSSQAEKKHLDGAANVNHVHENGKTKSSTSKNHSADTSPAAKVTGATVQVQKKQGCIFGSMLGNAIPKKRADTDDKDKRDTTLEKIKSSVSL PFHSFAGGNEQQSKPAVEEATARISQDAHPEKSPAAKDVIMLDSESSDEELDDSEMKESAESPSKGDNETEPVTLSDLSSSFDKCCRSIDKKSGVDKSTQ GSSDVPQLKPFDYAAAAEKLLKFEKDPKKPDGAIDGKKSSSVDQSCKKRNSAGGGSVEKEDDRDEFRQGRRRQAFPASGNRSLSYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35910			Polynucleotidyl transferase, r...		Lus10039170 [exp]	0	1
AT5G01660			unknown protein		Lus10012220 [exp]	9.0	0.9049
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	10.0	0.9128
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10022043 [exp]	12.2	0.8961
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	14.4	0.9093
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	22.8	0.8805
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10035825 [exp]	24.4	0.8884
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10018073 [exp]	26.5	0.8851
AT5G41190			unknown protein		Lus10001487 [exp]	27.3	0.8976
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	34.0	0.8935
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	36.0	0.8874

Compare expression of checked genes

Lus10039170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.