Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19820 1170 / 0 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT4G27640 172 / 1e-43 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013763 [exp] 1308 / 0 AT5G19820 1295 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10034202 [exp] 186 / 6e-48 AT4G27640 1652 / 0.0 ARM repeat superfamily protein (.1) Lus10029067 [exp] 182 / 6e-47 AT4G27640 1646 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 44 / 0.0005 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008864 [exp] 44 / 0.0006 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G004800 [exp] 1234 / 0 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.003G220100 [exp] 1222 / 0 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.013G056600 [exp] 1130 / 0 AT5G19820 1644 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G082601 [exp] 538 / 6e-180 AT5G19820 554 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.017G137400 [exp] 550 / 5e-178 AT5G19820 682 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.007G084901 [exp] 522 / 4e-174 AT5G19820 509 / 1e-167 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.007G084501 [exp] 182 / 3e-52 AT5G19820 184 / 1e-53 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.010G169800 [exp] 182 / 7e-47 AT4G27640 1584 / 0.0 ARM repeat superfamily protein (.1) Potri.008G085800 [exp] 182 / 7e-47 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1) Potri.004G122133 [exp] 144 / 7e-39 AT5G19820 140 / 4e-38 embryo defective 2734, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10039172 pacid=23150288 polypeptide=Lus10039172 locus=Lus10039172.g ID=Lus10039172.BGIv1.0 annot-version=v1.0 ATGGACGAGGCAACTCAGCAGCTCCAGCAAGCTCAGCTGGCTGCCATCCTCGGAGCGGACCCGGCGCCTTTCGAAACCCTAATCTCCTCCCTCATGGCCT CCTCCAACGAGCAGCGCTCCCAGGCCGAGCTCGCTTTCAACCTCTGCAAGCAGACCGATCCCGATTCCTTATCTCTCAAGCTCGCTCAGCTCCTCCAGCT GTCACCTCACCCCGACGCTCGCGCCATGTCCGCCGTCCTCCTCCGCAAGCTCCTCACCCGCGACGACGCTTACCTGTGGCCGCGTCTCAACATCAACACC CAGTCGTCTCTCAAATCCATCCTCCTAGCCTCTGTCCAGAACGAGCAGGCCAAGTCGATTCTGAAGAAGCTCTGTGACACTGTGTCTGAGCTGGCATCCG GTATCTTGCCTGACAACGGATGGCCGGAGCTCTTGCCCTTTATGTTTCAGTGTGTTTCGTCGGATTCGCCTAAATTGCAGGAGTCGGCCTTTTTTATTTT TGCTCAGCTGTCGCAGTACATCGGGGACACTCTGGTTCCGTTTATCAAGGAGCTGCACGGTGTTTTCTTGCAGTGTTTGAATTCTTCGCCTAGCTTTGAT GTGAAGATTGCTGCTTTGAATGCCGTTATCAACTTTATCCAGTGTCTGAGCAGCTCTTCTGATCGGGATAGATTGCCGAGGCGGAGAGTTTGGAAGAGGG TTGTCCCGGTTGCATCAGAGCTGTTGCCTGGATACTTGTCTGCTCCAGAGTGGCAGAAACACCACGCCGCCCTCATTGCCCTTGCTCAAATTGCGGAGGG CTGCGCTAAGGTGATGTTGAAAACCCTTGAGCAAGTAGTCACAATGGTTCTCAACTCGTTCCAAGATCCTCATCCCAGAGTAAGGTGGGCAGCGATAAAT GCGATAGGGCAGTTGTCTACAGACTTGGGTCCAGATTTGCAAAATCATTATCATAGTAGAGTGCTGCCGGCACTAGCTGCTTCAATGGACGACTTCCAGA ATCCAAGAGTGCAGGCACATGCTGCATCGGCTGTTCTTAACTTCAGTGAGAACTGTACTCCTGAACTCCTGACGCCTTATTTGGATGGCATCGTAAGCAA ATTGCTGGTGCTCCTACAGAATGGAAAGCAAATGGTTCAAGAGGGAGCATTGACTGCTTTGGCATCAGTAGCTGACTCATCTCAGGAGCATTTCCAAAAG TACTATGATGCAGTGATGCCTTACTTGAAAGCAATCTTGGTTAATGCAACCGACAAATCTAACCGTATGCTTCGTGCCAAGTCTATGGAATGCATTAGTC TGGTCGGGATGGCTGTTGGAAAGGATAAGTTCAGGGATGATGCTAAGCAGGTCATGGAAGTTCTCATGTCCTTACAAGGCTCTCAAATGGAGGCCGATGA CCCAACTACAAGCTACATGCTACAGGCATGGGCAAGACTGTGCAAATGCTTGGGGCAAGATTTCCTTCCATACATGAATGTTGTTATGCCTCCTCTGCTC CAGTCTGCCCAATTGAAGCCAGATGTGACCATTACATCTGCAGATTCTGATAATGAGATTGATGATTCGGATGATGACAGTATGGAGACCATTACTCTTG GAGACAAAAGGATTGGCATCAAAACTAGTGTTCTTGAAGAAAAAGCTACTGCTTGCAATATGCTGTGCTGTTATGCTGATGAGTTGAAAGAAGGTTTCTA TCCATGGATTGATCAGGTGGCCCCAACTCTAGTGCCCCTTCTTAAATTTTACTTCCACGAAGAAGTGAGAAAAGCTGCAGTATCCGCAATGCCAGAGCTT CTTCGGTCAGCTAAGTTGGCTGTAGAGAAGGGATTAGCACAAGGTCGTGATGGCTCATATGTTAAGCAGTTATCTGACTACATTATTCCAGCTCTGGTTG AAGCATTGCACAAGGAACCTGACACTGAAATCTGTGCTAATATGTTGGATGCACTAAATGAATGTGTTCAGATATCTGGCACACTTGTTGATGAAAGCCA GGTTAAATCAATTGTGGATGAGATAAAGCAAGTAATCACTGCTAGCTCAAGCAGAAAAAAAGAAAGGGCAGAGAGAGCGCAAGCAGAAGACTTCGATGCT GAGGAGGGTGAGCTGATCAAAGAGGAAAATGAGCAAGAGGAGGAAGTATTTGACCAAGTTGGTGAAATAATGGGAACTTTGATCAAGACATTCAAAGCTT CTTTCTTGCCTTACTTTGATGAGTTATCATCATACCTCACTCCTATGTGGGGCAAGGATAAGACAGCTGAGGAGAGAAGGATTGCGATTTGTATTTTTGA TGATGTTGCCGAGCAATGTCGTGAAGCAGCCTTAAAGTATTATGATACTTTCCTACCATTTTTACTGGAAGCTTGCAATGATGAGAATCCAGATGTCCGA CAGGCAGCTGTTTATGGACTGGGTGTATGTGCAGAGTTTGGCGGTTCTACTTTCAAGCCTCTTGTTGGAGAATCACTTTCAAGACTTAATGTTGTGGTAG GGCACCCTAATGCCAAGAACTCTGAAAATGTAATGGCATATGATAATGCCGTTTCTGCTTTGGGGAAGATTTGTCAGTTCCATCGCGACAGCATCGATGC TTCACAGGTTATCCCTGCATGGTTAAATTGTCTGCCAATTACTGGTGATTTGATTGAAGCAAAAGTTGTCCATGAACAACTTTGTTCCATGGTTGAGAGG TCGGATGGTGTAGTTTTGGGGCCGAACAACCAGTATCTCCCAAAGATTGTTTCAGTGTTTGCTGAGGAATCGCTTCTTTTCCTGGCTAGCTTAATTAACT TTGGAGCTTTAATTACCTTGCTTACCAAAAAAGCATTGTTTTCTGGAGATATTCTGTTTAGACCATCTACTTGTGTTCATGGAGAAACTATTATTGGTGT AGGTCCTATGTGGGAAGGAACTTGCAACAGAACAGACCTTAAGTAG
AA sequence Show only first row Show all	>Lus10039172 pacid=23150288 polypeptide=Lus10039172 locus=Lus10039172.g ID=Lus10039172.BGIv1.0 annot-version=v1.0 MDEATQQLQQAQLAAILGADPAPFETLISSLMASSNEQRSQAELAFNLCKQTDPDSLSLKLAQLLQLSPHPDARAMSAVLLRKLLTRDDAYLWPRLNINT QSSLKSILLASVQNEQAKSILKKLCDTVSELASGILPDNGWPELLPFMFQCVSSDSPKLQESAFFIFAQLSQYIGDTLVPFIKELHGVFLQCLNSSPSFD VKIAALNAVINFIQCLSSSSDRDRLPRRRVWKRVVPVASELLPGYLSAPEWQKHHAALIALAQIAEGCAKVMLKTLEQVVTMVLNSFQDPHPRVRWAAIN AIGQLSTDLGPDLQNHYHSRVLPALAASMDDFQNPRVQAHAASAVLNFSENCTPELLTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK YYDAVMPYLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQDFLPYMNVVMPPLL QSAQLKPDVTITSADSDNEIDDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFYPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPEL LRSAKLAVEKGLAQGRDGSYVKQLSDYIIPALVEALHKEPDTEICANMLDALNECVQISGTLVDESQVKSIVDEIKQVITASSSRKKERAERAQAEDFDA EEGELIKEENEQEEEVFDQVGEIMGTLIKTFKASFLPYFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYDTFLPFLLEACNDENPDVR QAAVYGLGVCAEFGGSTFKPLVGESLSRLNVVVGHPNAKNSENVMAYDNAVSALGKICQFHRDSIDASQVIPAWLNCLPITGDLIEAKVVHEQLCSMVER SDGVVLGPNNQYLPKIVSVFAEESLLFLASLINFGALITLLTKKALFSGDILFRPSTCVHGETIIGVGPMWEGTCNRTDLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10039172 [exp]	0	1
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	5.1	0.9300
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10039684 [exp]	7.5	0.9141
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016373 [exp]	8.1	0.9165
AT3G63460		EMB2221	transducin family protein / WD...		Lus10039578 [exp]	10.6	0.8916
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026726 [exp]	10.6	0.9066
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10016597 [exp]	11.7	0.9130
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10015332 [exp]	11.7	0.8894
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013101 [exp]	12.0	0.9164
AT5G19690		STT3A	staurosporin and temperature s...		Lus10011124 [exp]	13.4	0.8050
AT1G19835			Plant protein of unknown funct...		Lus10034509 [exp]	13.7	0.8949

Compare expression of checked genes

Lus10039172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.