Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08810 462 / 2e-162 SUB1 calcium ion binding (.1) AT2G04280 342 / 6e-115 unknown protein AT4G12700 336 / 7e-113 unknown protein AT2G41150 64 / 2e-11 unknown protein AT3G56750 57 / 5e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039176 [exp] 580 / 0 AT4G08810 845 / 0.0 calcium ion binding (.1) Lus10013761 [exp] 572 / 0 AT4G08810 836 / 0.0 calcium ion binding (.1) Lus10041091 [exp] 338 / 2e-114 AT2G04280 745 / 0.0 unknown protein Lus10036415 [exp] 341 / 2e-110 AT2G04280 828 / 0.0 unknown protein Lus10008860 [exp] 61 / 2e-10 AT2G41150 545 / 0.0 unknown protein Lus10018111 [exp] 58 / 3e-09 AT2G41150 555 / 0.0 unknown protein Lus10023250 [exp] 57 / 6e-09 AT2G41150 547 / 0.0 unknown protein Lus10022403 [exp] 56 / 1e-08 AT2G41150 560 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005500 [exp] 490 / 2e-173 AT4G08810 762 / 0.0 calcium ion binding (.1) Potri.014G170200 [exp] 343 / 1e-115 AT2G04280 862 / 0.0 unknown protein Potri.003G219200 [exp] 272 / 1e-89 AT4G08810 451 / 1e-155 calcium ion binding (.1) Potri.006G040400 [exp] 59 / 1e-09 AT3G56750 567 / 0.0 unknown protein Potri.016G035600 [exp] 58 / 2e-09 AT3G56750 549 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039175 pacid=23150419 polypeptide=Lus10039175 locus=Lus10039175.g ID=Lus10039175.BGIv1.0 annot-version=v1.0 ATGTATTTGAACAGGACATTTGTGATGGATTTGAGTTTGTGCCTATCAGGTAACTATAATCCCACCGGGAAAGATCAAGAGGGGAAGGACTTTCGATACT ATTTCGATTTCGAGCATCTTAAGGAGGTGGCATCCATTGTAGAAGAGAGTGAGTTCTTGAGAGACTGGAAGAAATGGGACCGTTCACACAGAAAGAAGAT CCCGGTCAGAAAGATCGTAACACACAAGACGACCCCGATGCAACTGAAGAAGGATAAGAGCACCGTGATCTGGAGGCAGTTCGATGCTCCCGAGCCGGAG AACTACTGGTACAGAGTCTGCGAGGGAGAAGCCGCTAAGCAAATTCGCAGACCGTGGCATGCAGTTTGGAAGTCAAAGAGACTAATGAATATCGTTTCGG AGATCAGCGGGAGGATGGACTGGGATTTCGACGCCGCTCACGTGGTTCGAGGGGAGAAAGCGGCTAACAAGGAGCGGTGGCCAAGGTTGGATTGGGACAC GTCTCCCGATGCGCTTGTTACGAAGCTTCAGACAATGATCCAGCCGTGGAGGAACGTGTACATTGCGACGAACGAACCATTTTATAACTACTTTGATAAA CTGAGGTCGCATTATAAAGTGCATTTACTTGATGATTATAAGGAGCTGTGGGGGAATGGGAGCGAATGGTACAACGAGACGATGGCCTTGAACGGAGGAA GGCCGGTCGAGTTCGATGGATATATGAGAGTTGCTGTGGATACCGAGGTCTTCTACAGGGCGAAAACTCGGGTCGAGACATTCTATAATTTGACTGGTGA TTGCAAGGACGGAATCAATACATGTTGA
AA sequence Show only first row Show all	>Lus10039175 pacid=23150419 polypeptide=Lus10039175 locus=Lus10039175.g ID=Lus10039175.BGIv1.0 annot-version=v1.0 MYLNRTFVMDLSLCLSGNYNPTGKDQEGKDFRYYFDFEHLKEVASIVEESEFLRDWKKWDRSHRKKIPVRKIVTHKTTPMQLKKDKSTVIWRQFDAPEPE NYWYRVCEGEAAKQIRRPWHAVWKSKRLMNIVSEISGRMDWDFDAAHVVRGEKAANKERWPRLDWDTSPDALVTKLQTMIQPWRNVYIATNEPFYNYFDK LRSHYKVHLLDDYKELWGNGSEWYNETMALNGGRPVEFDGYMRVAVDTEVFYRAKTRVETFYNLTGDCKDGINTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	0	1
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	1.0	0.9762
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	3.5	0.9660
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	4.2	0.9494
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10024404 [exp]	5.5	0.9359
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039176 [exp]	6.9	0.9527
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	7.1	0.9417
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10024859 [exp]	7.3	0.9418
AT5G67540			Arabinanase/levansucrase/inver...		Lus10011543 [exp]	7.3	0.9275
AT5G66120			3-dehydroquinate synthase, put...		Lus10028429 [exp]	7.5	0.9551
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	7.7	0.9508

Compare expression of checked genes

Lus10039175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.