Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08810 775 / 0 SUB1 calcium ion binding (.1) AT2G04280 496 / 8e-171 unknown protein AT4G12700 470 / 8e-161 unknown protein AT2G41150 79 / 1e-15 unknown protein AT3G56750 72 / 3e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013761 [exp] 1022 / 0 AT4G08810 836 / 0.0 calcium ion binding (.1) Lus10039175 [exp] 580 / 0 AT4G08810 463 / 5e-163 calcium ion binding (.1) Lus10041091 [exp] 459 / 2e-157 AT2G04280 745 / 0.0 unknown protein Lus10036415 [exp] 461 / 5e-152 AT2G04280 828 / 0.0 unknown protein Lus10008860 [exp] 77 / 1e-14 AT2G41150 545 / 0.0 unknown protein Lus10018111 [exp] 75 / 5e-14 AT2G41150 555 / 0.0 unknown protein Lus10022403 [exp] 72 / 2e-13 AT2G41150 560 / 0.0 unknown protein Lus10023250 [exp] 72 / 4e-13 AT2G41150 547 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005500 [exp] 865 / 0 AT4G08810 762 / 0.0 calcium ion binding (.1) Potri.003G219200 [exp] 502 / 3e-175 AT4G08810 451 / 1e-155 calcium ion binding (.1) Potri.014G170200 [exp] 504 / 4e-174 AT2G04280 862 / 0.0 unknown protein Potri.006G040400 [exp] 77 / 7e-15 AT3G56750 567 / 0.0 unknown protein Potri.016G035600 [exp] 76 / 2e-14 AT3G56750 549 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039176 pacid=23150618 polypeptide=Lus10039176 locus=Lus10039176.g ID=Lus10039176.BGIv1.0 annot-version=v1.0 ATGAAGGAAGCGACTCCTGGGACTGAGCCGATTGGCCAGAACCTAATCAAATCGATCAGTAATCTGTGCTTCTCGGTGTTTGTCTTCACTGTTTTGATAT TCACTGTCATTGCAATCACTTACCAACCACCAGATCCATGGCTGGAATCAGCTCCAGCTCTTACCAAATTCTTCACCCAGAGTGAAAATGCCACTTTCCA AATCGACAATTCCATCCTCAAGACTGGCGAGGATATACCGACCGGTTCTGCTCCCACGGCTCTGGCCACTGAAGATTTGAAGCCCATAACCGAGGAGGTG ATCGAGAAGTCCGAGTCTAAGATCGAGAATTCTAATTCTACTCTCGAATCCTCGGGCTGTGAGGATCTACAGGTTGTCAATTGCTCGGATCCGAGGGTTT TGATCACCGTTGAGAGGTTTAATCTGAAGCGTTTCAAGAGCATTGTGTTCTTGGAGTATCAGACTCCAGTCAACGGCTCGAAACCGGACGAGTGCGACGT GTCCTGGAAGTTCAGGAACAAGAAGGAGAAGTCTTGGAGGAAGTATAGAGACTTCAGGAGGTTTAAGTTTGGATTCGGAGAGAATTGTACGTATAAGATT GTTCATTCCAACGGCTGGCATTCTGGTCTCAATGCTCGCCGGCCGAGGGCTAGAGCCGGCGTTCCTAGGCCGAGAGTTGCTCCACTGGTCCGTGATGCTG AGATCAACGACACCATACCGACTCTCGGATCGGATTCCAATTTCCGGAAAGGGAAGTACTTATACTATGCAAGAGGAGGAGATTATTGCAAAGGGATGAA TCAATACATGTGGAGCTTCTTATGTGGATTAGGTGAAGCAATGTATTTGAACAGGACATTTGTGATGGATTTGAGTTTGTGCCTATCAGGTAACTATAAT CCCACCGGGAAAGATCAAGAGGGGAAGGACTTTCGGTACTATTTCGATTTCGAGCATCTTAAGGAGGTGGCATCCATTGTAGAAGAGAGTGAGTTCTTGA GAGACTGGAAGAAATGGGACCGTTCACACAGAAAGAAGATCCCGGTCAGAAAGATCGTAACACACAAGACGACCCCGATGCAACTGAAGAAGGATAAGAG CACCGTGATCTGGAGGCAGTTCGATGCTCCCGAGCCGGAGAACTACTGGTACAGAGTCTGCGAGGGAGAAGCCGCTAAGCAAATTCGCAGACCGTGGCAT GCAGTTTGGAAGTCAAAGAGACTAATGAATATCGTTTCGGAGATCAGCGGGAGGATGGACTGGGATTTCGACGCCGCTCACGTGGTTCGAGGGGAGAAAG CGGCTAACAAGGAGCGGTGGCCAAGGTTGGATTGGGACACGTCTCCCGATGCGCTTGTTACGAAGCTTCAGACAATGATCCAGCCGTGGAGGAACGTGTA CATTGCGACGAACGAACCATTTTATAACTACTTTGATAAACTGAGGTCGCATTATAAAGTGCATTTACTTGATGATTATAAGGAGCTGTGGGGGAATGGG AGCGAATGGTACAACGAGACGATGGCCTTGAACGGAGGAAGGCCGGTCGAGTTCGATGGATATATGAGAGTTGCTGTGGATACCGAGGTCTTCTACAGGG CGAAAACTCGGGTCGAGACATTCTATAATTTGACTGGTGATTGCAAGGACGGAATCAATACATGTTGA
AA sequence Show only first row Show all	>Lus10039176 pacid=23150618 polypeptide=Lus10039176 locus=Lus10039176.g ID=Lus10039176.BGIv1.0 annot-version=v1.0 MKEATPGTEPIGQNLIKSISNLCFSVFVFTVLIFTVIAITYQPPDPWLESAPALTKFFTQSENATFQIDNSILKTGEDIPTGSAPTALATEDLKPITEEV IEKSESKIENSNSTLESSGCEDLQVVNCSDPRVLITVERFNLKRFKSIVFLEYQTPVNGSKPDECDVSWKFRNKKEKSWRKYRDFRRFKFGFGENCTYKI VHSNGWHSGLNARRPRARAGVPRPRVAPLVRDAEINDTIPTLGSDSNFRKGKYLYYARGGDYCKGMNQYMWSFLCGLGEAMYLNRTFVMDLSLCLSGNYN PTGKDQEGKDFRYYFDFEHLKEVASIVEESEFLRDWKKWDRSHRKKIPVRKIVTHKTTPMQLKKDKSTVIWRQFDAPEPENYWYRVCEGEAAKQIRRPWH AVWKSKRLMNIVSEISGRMDWDFDAAHVVRGEKAANKERWPRLDWDTSPDALVTKLQTMIQPWRNVYIATNEPFYNYFDKLRSHYKVHLLDDYKELWGNG SEWYNETMALNGGRPVEFDGYMRVAVDTEVFYRAKTRVETFYNLTGDCKDGINTC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039176 [exp]	0	1
AT1G72180			Leucine-rich receptor-like pro...		Lus10009476 [exp]	3.6	0.9525
AT3G03210			unknown protein		Lus10031359 [exp]	3.7	0.9508
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10019325 [exp]	4.9	0.9667
AT3G25290			Auxin-responsive family protei...		Lus10025877 [exp]	5.7	0.9616
AT3G15480			Protein of unknown function (D...		Lus10032662 [exp]	6.0	0.9623
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016897 [exp]	6.5	0.9367
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	6.9	0.9527
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10032530 [exp]	8.5	0.9571
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	8.7	0.9627
AT1G51630			O-fucosyltransferase family pr...		Lus10035749 [exp]	12.0	0.9246

Compare expression of checked genes

Lus10039176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.