Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54250 230 / 5e-79 NRPE8A, NRPB8A, ATRPABC16.5 RNA polymerase Rpb8 (.1) AT3G59600 224 / 1e-76 NRPE8B, NRPD8B, NRPB8B RNA polymerase Rpb8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013760 [exp] 308 / 1e-109 AT1G54250 230 / 1e-78 RNA polymerase Rpb8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G120500 [exp] 245 / 9e-85 AT3G59600 228 / 5e-78 RNA polymerase Rpb8 (.1) Potri.013G120400 [exp] 156 / 6e-50 AT3G59600 135 / 1e-41 RNA polymerase Rpb8 (.1) Potri.013G072000 [exp] 146 / 9e-46 AT3G59600 138 / 1e-42 RNA polymerase Rpb8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF03870 [flax] [poplar] RNA_pol_Rpb8 RNA polymerase Rpb8
Representative CDS sequence Show only first row Show all	>Lus10039177 pacid=23150436 polypeptide=Lus10039177 locus=Lus10039177.g ID=Lus10039177.BGIv1.0 annot-version=v1.0 ATGTCGAATATAATCCTCTTCGAGGACATTTTCTTCGTCGACCAGCTCAACCCCGATGGCAAGAAGTTCGACAAAGTTACTCGAATTCAAGCGCATAGCC AGAATTGTGACATGTTTATGCATCTCGATATCAACACAGAGATATATCCTATGTTTGTGAATGACAAGTTTACTATGGCACTGGCTTCTACATTAGACTA TGATGGGACACCTGACACTGGCTACTACAATGCAGCATCAAGAAGTACCCTGGCAGACAAATATGAATATGTCATGCACGGGAAGCTATACAAGCTATCC GAGGAAGGCTCAGGGAGATCAATTAAAGCGGAAATGTATGCTTCCTTTGGAGGGCTTTTGATGTTGTTGAAAGGGGATCCTTCTCATGTAGCTAACTTTG AGCTTGATCAGAGAGTCTTCCTTCTCATCAGGAAGATCAGCAAGTGA
AA sequence Show only first row Show all	>Lus10039177 pacid=23150436 polypeptide=Lus10039177 locus=Lus10039177.g ID=Lus10039177.BGIv1.0 annot-version=v1.0 MSNIILFEDIFFVDQLNPDGKKFDKVTRIQAHSQNCDMFMHLDINTEIYPMFVNDKFTMALASTLDYDGTPDTGYYNAASRSTLADKYEYVMHGKLYKLS EEGSGRSIKAEMYASFGGLLMLLKGDPSHVANFELDQRVFLLIRKISK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54250		NRPE8A, NRPB8A,...	RNA polymerase Rpb8 (.1)		Lus10039177 [exp]	0	1
AT5G19490	CCAAT		Histone superfamily protein (....		Lus10026780 [exp]	3.2	0.8362
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027615 [exp]	3.9	0.8057
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10033857 [exp]	7.7	0.7942
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10041492 [exp]	8.1	0.7037
AT3G02220			unknown protein		Lus10043249 [exp]	10.8	0.8127
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10004400 [exp]	12.2	0.7835
AT2G26470			unknown protein		Lus10038230 [exp]	15.2	0.7820
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10037950 [exp]	16.9	0.7684
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Lus10034436 [exp]	19.2	0.7243
AT4G30820			cyclin-dependent kinase-activa...		Lus10022901 [exp]	20.3	0.7213

Compare expression of checked genes

Lus10039177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.