Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13600 692 / 0 calmodulin-binding family protein (.1) AT3G58480 531 / 0 calmodulin-binding family protein (.1) AT2G26190 417 / 1e-139 calmodulin-binding family protein (.1) AT4G33050 409 / 4e-137 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT3G52870 403 / 3e-135 IQ calmodulin-binding motif family protein (.1) AT5G57010 378 / 7e-125 calmodulin-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013759 [exp] 1197 / 0 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10025173 [exp] 753 / 0 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 740 / 0 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10003257 [exp] 437 / 9e-149 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10035595 [exp] 435 / 4e-147 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10029324 [exp] 426 / 3e-144 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10016219 [exp] 429 / 2e-143 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10013526 [exp] 413 / 2e-137 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 402 / 2e-133 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218800 [exp] 755 / 0 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.001G006200 [exp] 733 / 0 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.006G197500 [exp] 569 / 0 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 552 / 0 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.001G005600 [exp] 464 / 2e-160 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1) Potri.018G061901 [exp] 454 / 5e-154 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 443 / 1e-149 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.006G114700 [exp] 427 / 2e-144 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.006G226400 [exp] 428 / 6e-144 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226500 [exp] 322 / 2e-105 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039178 pacid=23150245 polypeptide=Lus10039178 locus=Lus10039178.g ID=Lus10039178.BGIv1.0 annot-version=v1.0 ATGGGAATTTCGTTATCGTGCCCATTTGGAAACGCAGTAGAGAATCTGCTTGCATCAGTGGTTGTGAAATCCATCAGCTTCGGAGACGATGAAGAAGCCA AGACACCTGTACGTTCTGTGAGCTTCGGGAAATCAGATTCGGAGCCCACAATATCGTCCAAGTCTGGAGAAATGGTGGTGGTCGAAAGATCCGTGAGCTT GAAAGGGCTCGAGTTTGACAAGCTGATGATGAACTCCAATATGGAAAATCAATATAAAGATGATACATTGCTATTCGAAGAGATGATTCAGATGCCTGAG AAGAAGCTGCCGGTTTTCGATCCGGCCAACCCAAAGCACCAGGCTGCTGTGAAGTTGCAGAAGGTTTACAAGAGCTTCAGAACCAGGAGAAAGCTCGCTG ATTGCGCTGTCCTTGTTGAGCAAAGCTGGTGGAAGCTCTTGGATTTCGCTGAGCTCAAGCATAGCTCCATCTCTTTTTTCGACATCGAGAAGCATGAGAC CGCCATGTCGCGCTGGTCCAGAGCTAGAACTAGAGCTGCCAAGGTTGGGAAAGGGTTGTCCAAGAATGGCAAGGCTCAGAAGCTTGCTCTCCAGCATTGG CTTGAAGCTATTGACCCAAGGCATCGATATGGCCACAACCTTCATTTCTATTATGACAACTGGCTTCATTCCAAGAGCAGGGAGCCTTTCTTTTACTGGC TGGACATAGGTGAAGGAAAGGAAGTTAACATTGTTGAGAAATGCCCACGGTGGAAGCTACAACAGCAATGCATCAAGTATCTTGGTCCAATGGAAAGGAA GGCGTATGAAGTTGTGGTTGAAGATGGGAAATTGATGTACAAGGAAACTGGGGAGTTGCTCAACACAGCTGGCGATTCCAAGTGGATATTTGTTCTTAGT ACTTCTAAGAACTTGTATGTTGGTCAGAAGAAGAAGGGTCAGTTTCAGCACTCTAGCTTTTTGGCTGGAGGTGTCACCACTGCTGCTGGAAGGTTGATTG CTGAGGAAGGCGTCCTAAAGGCAGTTTGGCCTCACAGTGGTCATTATCGGCCCACGGAGGAGAATTTCCGAGACTTCCTTTCGTTCCTTGTGGAAAACAA TGTTGATGTCACAGATGTTAAGACAAGTCCTGTGGATGAGGAAGACGGTTCGCTATCAAAACAAAGAAGCAGTAAACATCTTCGAAACCATTCTGAAGAC GACTTCATAGAAACAGTCGATGAGAACTTGACTTCACTAATTAGCAGAAACCCTGTCGAATTAGTGCAAGAAGAGGAGGTTTTCTCTAGTGCAGTAGAAG AACAACACAAGCCAGAAGCCCTATGTAACTTCAGCAAGAAGTTAACCAGTCTTGAAATTCCTGAGAGGGATGATCATTTGTTTCACTGGAGTGATCCTAG CCAGCATTTGGTCGAAAATGGATACGAATCCGCAGATGAAGAGGCTGCTGATGATGGAGAAGGAGGGGAGGAGGCGGTTCCTCAAGAAGCGATCTTGGAG AGGATCAATTCGAAGAAGGGGATGAAGTCTTATCAACTAGGAAGGCAACTGTCCTGCAAATGGACAACAGGAGCAGGACCTCGAATCGGGTGCGTTAGAG ACTACCCTTCAGAACTGCAGTTCAGGGCTCTGGAGCAAGTAAACTTGTCTCCGAGGTGCGCTACTAGTACTCCTTCAAGCCGAGGATTGTCTTTGCCTGC CGGCTATGGCATCGAAGGGCTGATGGCGACTACTACTGCAACAGTCGAGTCGCCATCGTTCTCGAGGCTGAATCGGTTCATGAGTCAAAGCTTACCCTTT TCAAGTAGAACACAATGCTCGTCGCCATTGTCGTTAGCCATGACCGAATGA
AA sequence Show only first row Show all	>Lus10039178 pacid=23150245 polypeptide=Lus10039178 locus=Lus10039178.g ID=Lus10039178.BGIv1.0 annot-version=v1.0 MGISLSCPFGNAVENLLASVVVKSISFGDDEEAKTPVRSVSFGKSDSEPTISSKSGEMVVVERSVSLKGLEFDKLMMNSNMENQYKDDTLLFEEMIQMPE KKLPVFDPANPKHQAAVKLQKVYKSFRTRRKLADCAVLVEQSWWKLLDFAELKHSSISFFDIEKHETAMSRWSRARTRAAKVGKGLSKNGKAQKLALQHW LEAIDPRHRYGHNLHFYYDNWLHSKSREPFFYWLDIGEGKEVNIVEKCPRWKLQQQCIKYLGPMERKAYEVVVEDGKLMYKETGELLNTAGDSKWIFVLS TSKNLYVGQKKKGQFQHSSFLAGGVTTAAGRLIAEEGVLKAVWPHSGHYRPTEENFRDFLSFLVENNVDVTDVKTSPVDEEDGSLSKQRSSKHLRNHSED DFIETVDENLTSLISRNPVELVQEEEVFSSAVEEQHKPEALCNFSKKLTSLEIPERDDHLFHWSDPSQHLVENGYESADEEAADDGEGGEEAVPQEAILE RINSKKGMKSYQLGRQLSCKWTTGAGPRIGCVRDYPSELQFRALEQVNLSPRCATSTPSSRGLSLPAGYGIEGLMATTTATVESPSFSRLNRFMSQSLPF SSRTQCSSPLSLAMTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13600			calmodulin-binding family prot...		Lus10039178 [exp]	0	1
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10012223 [exp]	2.0	0.9411
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016469 [exp]	4.1	0.9461
AT1G66880			Protein kinase superfamily pro...		Lus10009151 [exp]	6.3	0.9287
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	7.9	0.9408
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10005362 [exp]	13.0	0.9405
AT3G55470			Calcium-dependent lipid-bindin...		Lus10040291 [exp]	13.3	0.9250
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Lus10030362 [exp]	14.8	0.9270
AT5G06740			Concanavalin A-like lectin pro...		Lus10016257 [exp]	15.9	0.9243
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006353 [exp]	16.3	0.9300
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	16.6	0.9323

Compare expression of checked genes

Lus10039178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.