Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13560 606 / 0 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G01630 466 / 9e-161 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 438 / 9e-150 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 437 / 3e-149 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 326 / 1e-106 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 318 / 1e-103 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 318 / 2e-103 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G29360 313 / 1e-100 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G56590 311 / 3e-100 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 283 / 3e-89 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013758 [exp] 843 / 0 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013465 [exp] 479 / 1e-165 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10007929 [exp] 463 / 5e-160 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 460 / 9e-159 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002295 [exp] 461 / 2e-158 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 459 / 1e-157 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031456 [exp] 429 / 7e-146 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 326 / 4e-106 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10018306 [exp] 316 / 2e-102 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218500 [exp] 662 / 0 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G006500 [exp] 661 / 0 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.010G108500 [exp] 495 / 4e-172 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.017G130200 [exp] 481 / 1e-166 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 480 / 3e-166 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G133200 [exp] 474 / 4e-164 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G006100 [exp] 446 / 2e-152 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 432 / 3e-147 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G094400 [exp] 335 / 9e-110 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G068600 [exp] 326 / 5e-106 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10039179 pacid=23150644 polypeptide=Lus10039179 locus=Lus10039179.g ID=Lus10039179.BGIv1.0 annot-version=v1.0 ATGCATATGGTAACTGCACTAACCTTCCTTCTTGATAATTCATGTGCACATATAGAGGGTTTATGTCAGAAAATCGAAAGCGAAGCTATTTCCGAGACTC TCCTGAAATATTCTATCACATTCATAGGTGCATTTGTCGGAATAAACATTGGAACCGACGTTTCAAACATGCCACCCGCATCGGACATTGTCACGATGCT TAAAGCTAAAGACATAACACACGTACGCCTATACGATGCGGATTCTCACATGTTGAGGGCACTCGCAAACAGCAGTATCGAAGTAATGGTCGGAGTAACT AACGAGGAAGTCTTAATGATCGGAGAATCTCCAGCAGCGGCTGCTTCATGGATCAACAAAAATGTAGCAGCTTACTTGCCTTCAACCAACATCACAGCCA TAGCAGTTGGCAGCGAGGTTCTTACTTCGGTACCGAATTTATCCCCTGTCCTGGTTCCTTCCATGCAGTATCTTCACAAAGCACTCGTTGCTTCGAATCT AAACTATCAGATCAAGGTCTCAACTCCTCAAGCTATGGACGTTATCCCCAAGCCGTTCCCGCCTTCTACTGCAACCTTCACTAATGATAACAACACAATT TATCAGCTCCTTCAGTTTCTGAAGAACACCAACTCATACTTCATGCTGAATGCATATCCTTATTATGGATACACTACCGGAAATGGCATCTTCCCGCTCG ATTACGCTTTGTTCCAACCACTCGCCTCGGTCAAGCAGATTGTCGACCCGAACACTTTACTCCACTACGACAGCATGTTTGATGCAATGGTGGATGCTGC TTATTATGCGATGGATGCTCTCAATTTCTCCGGAATCCCTGTTGTTGTTACTGAAACAGGCTGGCCTACTCTTGGCGGGGCGAAAGAGCCTGATGCCACG GTCGAGAATGCAGGGAAGTATATTAGTAGTCTGATCCAAAGGGTTCATAATGATTCGGGGCCTCCTAGTCATCCAAGCATTCCCATTAACACGTACATAT ACGAGCTTTTCAATGAAGACAAGAGACCTGGGCCTGAGTCAGAGAAGAATTGGGGGCTGTATTCCCCCAATGGTACTGCTGTTTATGCTCTTAATTTGAA CGGCTCGGATGATGTGATGTCTGGGAATTCGACTGGTGGTACGTTTTGTGTTGCGAAATCGAATGCAGACCCTAATAAGCTGAAAGCAGGACTTGACTGG GCTTGTGGGCAAGGTGGAGCTAATTGTGCACCTGTGCAAAAGGGTAGACCGTGTTTTCAACCTGATAGTTACCAAAATCATGCTTCTTTTGCATTTAACG ATTATTATCAGAAGATGCACGGTGCTGGCGCGACGTGTGATTTCGATGGAACCGCATCAATAACGAAAGTTGATCCCAGTTATGGATCATGCATCTTCAC AGGAAGTTCGAACTCGAGTGGAGGAGGGGATATGTTTTCACCAACGGCATTCGGACCTGTGAGCCCTCAGTTTGGCACGAGCTTCAAGTTGGTGGCTTCT CGAAGCCGGGTTGCAGCAGCAGCAGCAGTTCTTGGGTTGGTGTTCTTAGTTTGA
AA sequence Show only first row Show all	>Lus10039179 pacid=23150644 polypeptide=Lus10039179 locus=Lus10039179.g ID=Lus10039179.BGIv1.0 annot-version=v1.0 MHMVTALTFLLDNSCAHIEGLCQKIESEAISETLLKYSITFIGAFVGINIGTDVSNMPPASDIVTMLKAKDITHVRLYDADSHMLRALANSSIEVMVGVT NEEVLMIGESPAAAASWINKNVAAYLPSTNITAIAVGSEVLTSVPNLSPVLVPSMQYLHKALVASNLNYQIKVSTPQAMDVIPKPFPPSTATFTNDNNTI YQLLQFLKNTNSYFMLNAYPYYGYTTGNGIFPLDYALFQPLASVKQIVDPNTLLHYDSMFDAMVDAAYYAMDALNFSGIPVVVTETGWPTLGGAKEPDAT VENAGKYISSLIQRVHNDSGPPSHPSIPINTYIYELFNEDKRPGPESEKNWGLYSPNGTAVYALNLNGSDDVMSGNSTGGTFCVAKSNADPNKLKAGLDW ACGQGGANCAPVQKGRPCFQPDSYQNHASFAFNDYYQKMHGAGATCDFDGTASITKVDPSYGSCIFTGSSNSSGGGDMFSPTAFGPVSPQFGTSFKLVAS RSRVAAAAAVLGLVFLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10039179 [exp]	0	1
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10027980 [exp]	5.1	0.9139
AT3G22520			unknown protein		Lus10000233 [exp]	6.5	0.8674
AT1G79060			unknown protein		Lus10031218 [exp]	8.0	0.9017
AT3G20390			endoribonuclease L-PSP family ...		Lus10040074 [exp]	8.0	0.8732
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10026284 [exp]	8.0	0.8875
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10039354 [exp]	8.4	0.8938
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	11.0	0.9014
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Lus10006568 [exp]	12.3	0.8942
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	12.4	0.8613
AT5G45590			Ribosomal protein L35 (.1)		Lus10010406 [exp]	14.3	0.8891

Compare expression of checked genes

Lus10039179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.