Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55280 245 / 5e-77 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218100 [exp] 328 / 5e-109 AT1G55280 304 / 2e-100 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039181 pacid=23150386 polypeptide=Lus10039181 locus=Lus10039181.g ID=Lus10039181.BGIv1.0 annot-version=v1.0 ATGGATTCGATTCCTCTCGGGAAAGTAACTTTTGCTCCGGCCAAAGCCACAACCCATCAGAAATCTCTATTCTCAGTAAAAGATCGGCGCTATCGCCGCC AAAGCAGCAGACTTTACCCGCGCGCGACTCTCAAGAAGAGCTACAGTCGATCCAACTTCCCAGGGCGTGATTCTATCTGCCCTGCCAACAGTAGTTCCCT GAATTTCTTGATTTCAGTTTTTTCAGTACTACTCTCTTGTCAAGAAGCTAACCTTGCTCCTTTCTCCACAGATTTTAAGGAATACGTGAGACCTTCTCGC CTTCTAGGAGTTGCAGAACCGAAACCCTGCAATGAAACATGGTGGGAGAGAAGCATTTCGTCTTTCAATGTGGACGGATCTTCTTCTTTCTACAAGATTC AGCTACAGACAAGCAACATGTACGGATCCGGTTTGGATGATCAAAATGCAGGTGTCCTTATGTGTTTGGTGGATGATACTGGCAGCTCAATATTACAGAG AATACCTTCCATTTCAAAGAGCAGTTCGACCGACTCAGGGAACCTTATCGAGTCTTCTGATCCGGTCCATTTCCAAAGAGGCGCCACTGACGAGTTTTTC TTCGAAGGACCTCCGCTTGGAAGGATCGAAGCTCTTTGGATCGGTGTTGATTCAGGCCAATGGAGATTGGAAAGTGTGAGCTTGACTGTTGTTAGTGGTT CTCAACCTTCATTGATCACAGCAAATGTTGAAGAAGAAGAAGAAGCAGTTCCATACTCCGGTTTCCATTACGAGTTTGATGCTGATGACATTCTGCTCGG AGAGGGAACTGATTTGTCAATGGTGGAAATTCGGCCTTGTCGTATATCCAAGCTATCCGATATTGTTGACCCTCTCACCATTTTGGTTCCTTCTACCTCA AAAATTCAATCACCAGACTCTGAGATATCCAGCAAGCAAAGCATGAAAGAATATGCAGACTTGAAACTGTCCTTGCTTTTGTACGATGCAGCGCTTATTA TTGCAGGGACGATAATGTCAAACCTCTCAGCAGATGAAAATGCAGCCTATGCATTCCTGATAGGGGGGATGTGTGGTTTCTCCTACCTGTTGTTGCTGCA GAGGTCTGTGGATGGATTGGAAGATTCGACAATGATGTCGAACAATCGAGGTGGTATGTTCGGTGGTCGGGGAATCAAGGGACCAATAGTGAGTTTGGGG TTGGTTGTGGCACTAACTCTGGGAGCAGCTAAATATGGGTTTGGAGATGTTCCAGCTGTAGTGTCTCCAAAGGAAGTGATACTGGGAATGCTTGGATTTC TGGTGTGTAAAGTTGCAGTCTTAATGGCTGCGTTTAAGCCAATAAAGAGTGATTGGTTCGAAGGAGAGTGA
AA sequence Show only first row Show all	>Lus10039181 pacid=23150386 polypeptide=Lus10039181 locus=Lus10039181.g ID=Lus10039181.BGIv1.0 annot-version=v1.0 MDSIPLGKVTFAPAKATTHQKSLFSVKDRRYRRQSSRLYPRATLKKSYSRSNFPGRDSICPANSSSLNFLISVFSVLLSCQEANLAPFSTDFKEYVRPSR LLGVAEPKPCNETWWERSISSFNVDGSSSFYKIQLQTSNMYGSGLDDQNAGVLMCLVDDTGSSILQRIPSISKSSSTDSGNLIESSDPVHFQRGATDEFF FEGPPLGRIEALWIGVDSGQWRLESVSLTVVSGSQPSLITANVEEEEEAVPYSGFHYEFDADDILLGEGTDLSMVEIRPCRISKLSDIVDPLTILVPSTS KIQSPDSEISSKQSMKEYADLKLSLLLYDAALIIAGTIMSNLSADENAAYAFLIGGMCGFSYLLLLQRSVDGLEDSTMMSNNRGGMFGGRGIKGPIVSLG LVVALTLGAAKYGFGDVPAVVSPKEVILGMLGFLVCKVAVLMAAFKPIKSDWFEGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	0	1
AT1G73350			unknown protein		Lus10031897 [exp]	2.0	0.9203
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	2.8	0.9332
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	5.7	0.9162
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10027994 [exp]	5.9	0.9051
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	6.0	0.8951
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10018885 [exp]	6.6	0.8715
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10033381 [exp]	6.9	0.9035
AT5G46550			DNA-binding bromodomain-contai...		Lus10011989 [exp]	6.9	0.9082
AT2G45530			RING/U-box superfamily protein...		Lus10008286 [exp]	7.2	0.9141
AT5G43920			transducin family protein / WD...		Lus10022847 [exp]	8.0	0.8867

Compare expression of checked genes

Lus10039181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.