Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04220 343 / 2e-118 Plant protein of unknown function (DUF868) (.1) AT5G48270 334 / 2e-114 Plant protein of unknown function (DUF868) (.1) AT4G12690 326 / 6e-112 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT3G13229 190 / 1e-58 Plant protein of unknown function (DUF868) (.1) AT5G28150 190 / 2e-58 Plant protein of unknown function (DUF868) (.1) AT3G04860 188 / 6e-58 Plant protein of unknown function (DUF868) (.1) AT5G11000 133 / 9e-36 Plant protein of unknown function (DUF868) (.1) AT2G27770 113 / 7e-29 Plant protein of unknown function (DUF868) (.1) AT2G25200 100 / 4e-24 Plant protein of unknown function (DUF868) (.1) AT2G36470 64 / 3e-11 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013755 [exp] 622 / 0 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10027127 [exp] 263 / 6e-87 AT2G04220 263 / 4e-87 Plant protein of unknown function (DUF868) (.1) Lus10032896 [exp] 259 / 2e-85 AT2G04220 264 / 1e-87 Plant protein of unknown function (DUF868) (.1) Lus10006223 [exp] 209 / 3e-66 AT4G12690 213 / 2e-68 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10019467 [exp] 191 / 1e-58 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10043317 [exp] 189 / 7e-58 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10036872 [exp] 174 / 1e-52 AT4G12690 202 / 2e-64 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10001787 [exp] 164 / 2e-48 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 160 / 8e-47 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G068100 [exp] 404 / 2e-142 AT2G04220 385 / 4e-135 Plant protein of unknown function (DUF868) (.1) Potri.007G101000 [exp] 392 / 1e-137 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1) Potri.001G467500 [exp] 258 / 6e-85 AT2G04220 270 / 5e-90 Plant protein of unknown function (DUF868) (.1) Potri.015G084500 [exp] 239 / 4e-77 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.012G089100 [exp] 230 / 9e-74 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.010G047700 [exp] 222 / 8e-71 AT5G48270 223 / 3e-71 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 196 / 1e-60 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 195 / 2e-60 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 181 / 7e-55 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 177 / 2e-53 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10039183 pacid=23150725 polypeptide=Lus10039183 locus=Lus10039183.g ID=Lus10039183.BGIv1.0 annot-version=v1.0 ATGGCTTTGCAGCATCCATTGAGAGTTTTCTCGGTGGGAGCTCAAGCATCACTTTCGACGGAGAAGGTAACTGAAGAATCGACGAACAACAAGACCCCTC AAAGCACGGTCACGTGCATTTACCAGACTCACGTCGCCGGATTCTGGCGAAATGTGGCTGTTACTTGGGGGAAGAACCTCATGAATTCCATCTCCCTCAA CCTCGTCATCAACAGCTTGGAAGGAGAGATATCCTACAGCTTCAAGCTAGACCTCAAGCCGTGGCATTTCTGGAGCAAACGGGGGAGCAAAGGGTTCGAG CTCGAAGGGAGCCAGATTGAGGTCCATTGGGATCTCCGATCGGCCAAGTTTGTGGGCACCTGCCCCGAGCCGTGCGGTGACTACTATGTTGTCGTGGTGT GCGACGAAGAGATCGTGTTGTTGTTGGGGGACTTGAAGAAAAAGGCGTACAAGAGGACAAAGGCGAGGCCCACTCTCGTGGAGCCCGTCCTGGTTTGCAA GAAGGAGAACGTATTCGCCAAGAAGTCGTTCTCCACGAGGGCTAAATTCGACGAGAAGAAGCAGCAGGAGCACGACATTATCATCGAGAGCTCTACTTCT GGGTTGAAAGACCCCGAAATGTGGATAAGCATAGACGGGCTCGTGATGGTCCACGTCAAGAACTTGCAGTGGAAATTCAGAGGGAACCAGATCGTGACGG TGAATAAACAGTCTGTCCAGATATTTTGGGATGTTCATGATTGGTTGTTCAGCGGTTCAGGAGGAGGAGCAAGTAGTAGTTCTAATGGGTGCAATCAAGG GTTGTTTACGTTTAAACCCGGAGCACCGGAGGTGGAGGAGGACTGTGATAGCCCCCACGGGACCACAGCTAGCAGCGATGTGAGCGATGGCACCTACTTC TCGACCAAGAGTAACAATGGGCCGACGTCGGATTTTTGCCTTCTCCTTTTTGCTTGGAAGATTGAATGA
AA sequence Show only first row Show all	>Lus10039183 pacid=23150725 polypeptide=Lus10039183 locus=Lus10039183.g ID=Lus10039183.BGIv1.0 annot-version=v1.0 MALQHPLRVFSVGAQASLSTEKVTEESTNNKTPQSTVTCIYQTHVAGFWRNVAVTWGKNLMNSISLNLVINSLEGEISYSFKLDLKPWHFWSKRGSKGFE LEGSQIEVHWDLRSAKFVGTCPEPCGDYYVVVVCDEEIVLLLGDLKKKAYKRTKARPTLVEPVLVCKKENVFAKKSFSTRAKFDEKKQQEHDIIIESSTS GLKDPEMWISIDGLVMVHVKNLQWKFRGNQIVTVNKQSVQIFWDVHDWLFSGSGGGASSSSNGCNQGLFTFKPGAPEVEEDCDSPHGTTASSDVSDGTYF STKSNNGPTSDFCLLLFAWKIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04220			Plant protein of unknown funct...		Lus10039183 [exp]	0	1
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Lus10009877 [exp]	3.7	0.8087
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	6.8	0.7998
					Lus10019815 [exp]	9.4	0.7835
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10004483 [exp]	16.3	0.7950
AT3G47570			Leucine-rich repeat protein ki...		Lus10037840 [exp]	17.7	0.7478
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10005285 [exp]	36.7	0.7716
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	39.1	0.7729
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	39.2	0.7297
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10041760 [exp]	41.0	0.6943
AT1G69550			disease resistance protein (TI...		Lus10040368 [exp]	66.0	0.7122

Compare expression of checked genes

Lus10039183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.