Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54140 106 / 7e-28 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 97 / 2e-24 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 89 / 1e-21 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 81 / 5e-19 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT4G21680 76 / 5e-17 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G19640 75 / 8e-17 Major facilitator superfamily protein (.1) AT2G02020 73 / 4e-16 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G32450 68 / 2e-14 NRT1.5 nitrate transporter 1.5 (.1) AT3G54450 62 / 2e-12 Major facilitator superfamily protein (.1) AT1G22540 61 / 5e-12 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018207 [exp] 132 / 4e-37 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10035516 [exp] 103 / 9e-27 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 100 / 1e-25 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10030947 [exp] 98 / 9e-25 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 97 / 1e-24 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 92 / 9e-23 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 91 / 2e-22 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10024300 [exp] 82 / 4e-19 AT3G54140 532 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10040100 [exp] 81 / 5e-19 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G042400 [exp] 114 / 1e-30 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 110 / 2e-29 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 109 / 5e-29 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 105 / 2e-27 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 104 / 4e-27 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 86 / 9e-21 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G029200 [exp] 76 / 2e-17 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 75 / 7e-17 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.005G233500 [exp] 75 / 7e-17 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G013400 [exp] 74 / 2e-16 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039184 pacid=23150293 polypeptide=Lus10039184 locus=Lus10039184.g ID=Lus10039184.BGIv1.0 annot-version=v1.0 ATGGGGATCGGCCTAGTCATCTCGATCTTCGCCATGGTGTACCCCGCCATCCTGGAGCTGATCAGGCTTAAAATGGTTCCTCAGTATTTCCTGATCGGTT GCGCTGAGGTGTTCACTTTCATCGGGCAGCTCGAGTTCTTCTGCGAGCAGGAGCCCAATGCGGTGAGGAGTTTGTGTTCGGCTCTTTTCGTTGACTACTG TGGCGTTGGGGAATTACTTGAGCTCACTGTTGGTGACGATTGTGACGGGGTTACCAAGGAAGGGAAGTCTGGGTGGATTCCGGATAGCTCAAATACGATG ATAATTCAACAAAGCGCGGGTGGATTCCGGATAACTCAAAGACGATGA
AA sequence Show only first row Show all	>Lus10039184 pacid=23150293 polypeptide=Lus10039184 locus=Lus10039184.g ID=Lus10039184.BGIv1.0 annot-version=v1.0 MGIGLVISIFAMVYPAILELIRLKMVPQYFLIGCAEVFTFIGQLEFFCEQEPNAVRSLCSALFVDYCGVGELLELTVGDDCDGVTKEGKSGWIPDSSNTM IIQQSAGGFRITQRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10039184 [exp]	0	1
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10043352 [exp]	3.9	0.9174
					Lus10039496 [exp]	10.0	0.9010
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	11.9	0.8958
					Lus10018837 [exp]	15.4	0.8881
AT5G05340			Peroxidase superfamily protein...		Lus10030149 [exp]	16.4	0.8838
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10028330 [exp]	18.5	0.8777
					Lus10009927 [exp]	19.7	0.8832
					Lus10034352 [exp]	21.2	0.8826
					Lus10041941 [exp]	21.9	0.8542
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	22.6	0.8795

Compare expression of checked genes

Lus10039184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.