Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42500 624 / 0 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G58500 623 / 0 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT1G10430 530 / 0 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 526 / 0 PP2A-1 protein phosphatase 2A-2 (.1.2) AT1G69960 522 / 0 PP2A serine/threonine protein phosphatase 2A (.1) AT4G26720 434 / 3e-154 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT5G55260 427 / 7e-152 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT3G19980 369 / 1e-128 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT1G50370 367 / 4e-128 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G29400 291 / 7e-98 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025174 [exp] 650 / 0 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016053 [exp] 642 / 0 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 615 / 0 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10042160 [exp] 539 / 0 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 531 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 526 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 526 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10036657 [exp] 524 / 0 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1) Lus10004252 [exp] 485 / 2e-168 AT1G69960 538 / 0.0 serine/threonine protein phosphatase 2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G217900 [exp] 648 / 0 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 645 / 0 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.016G062000 [exp] 606 / 0 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.006G196100 [exp] 605 / 0 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1) Potri.015G068300 [exp] 538 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 537 / 0 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 530 / 0 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 528 / 0 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.011G092200 [exp] 424 / 3e-150 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 423 / 5e-150 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10039185 pacid=23150698 polypeptide=Lus10039185 locus=Lus10039185.g ID=Lus10039185.BGIv1.0 annot-version=v1.0 ATGAGCTTGGATTCGGTCCCTTCCAGCACCCATGGCAACCTTGACGAGCAGATTAGTCAGCTTATGCAGTGCAAGCCCTTATCCGAACAAGATGTTCGAG GGCTATGTGAAAAGGCAAAGGAAATTCTGATGGACGAAAGCAATGTCCAGCCTGTGAAAAGCCCGGTTACAATCTGTGGTGACATCCATGGACAATTCCA TGATCTTGCTGAGCTTTTTCGCATTGGAGGAAAGTGCCCGGATACAAATTACTTGTTTATGGGAGACTATGTGGATCGTGGGTACTACTCTGTTGAAACA GTGACATTGCTGGTTTCCTTGAAAGTACGTTATCCTCAAAGAATTACCATTTTAAGAGGAAACCATGAGAGTCGTCAGATTACTCAAGTTTATGGATTTT ACGACGAGTGCCTGAGGAAGTATGGAAATGCAAATGTGTGGAAGATCTTTACAGATCTTTTTGATTATTTTCCGCTGACAGCACTGGTCGAGTCTGAGAT TTTTTGTCTTCATGGTGGTTTGTCCCCGTCCATTGAAACATTGGACAACATTCGGAACTTTGACCGCGTGCAAGAAGTTCCGCATGAGGGTCCCATGTGT GATCTTTTGTGGTCCGACCCTGATGACCGATGTGGTTGGGGTATTTCACCTCGTGGAGCTGGGTATACGTTTGGTCAGGATATTTCTGAGCAGTTCAACC ATACTAACAACCTAAAGCTGATTGCAAGAGCTCATCAGCTGGTCATGGAAGGCTACAACTGGGGTCATGATCAAAAGGTGGTTACCATATTCAGTGCACC AAATTATTGTTACCGCTGTGGAAACATGGCGTCTATTTTGGAAGTTGACGATTGCAAGGGTCATACATTCATCCAGTTCGAGCCGGCTCCTAGAAGGGGA GAACCGGATGTAACTAGGAGAACGCCTGATTACTTCCTATAA
AA sequence Show only first row Show all	>Lus10039185 pacid=23150698 polypeptide=Lus10039185 locus=Lus10039185.g ID=Lus10039185.BGIv1.0 annot-version=v1.0 MSLDSVPSSTHGNLDEQISQLMQCKPLSEQDVRGLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVET VTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMC DLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGYNWGHDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRG EPDVTRRTPDYFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	0	1
AT5G63620			GroES-like zinc-binding alcoho...		Lus10039625 [exp]	4.2	0.8632
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Lus10011468 [exp]	6.0	0.8297
AT5G04980			DNAse I-like superfamily prote...		Lus10033398 [exp]	8.5	0.8220
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10002489 [exp]	8.8	0.8530
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	9.1	0.8714
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	12.7	0.8625
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019191 [exp]	15.9	0.7919
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030918 [exp]	17.3	0.8436
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10038889 [exp]	18.0	0.8541
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	21.1	0.8593

Compare expression of checked genes

Lus10039185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.