Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17230 440 / 1e-153 PSY PHYTOENE SYNTHASE (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013753 [exp] 747 / 0 AT5G17230 446 / 4e-156 PHYTOENE SYNTHASE (.1.2.3) Lus10001416 [exp] 420 / 7e-146 AT5G17230 545 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10001050 [exp] 411 / 2e-142 AT5G17230 535 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10020729 [exp] 399 / 6e-138 AT5G17230 491 / 7e-174 PHYTOENE SYNTHASE (.1.2.3) Lus10029809 [exp] 389 / 1e-132 AT5G17230 491 / 3e-172 PHYTOENE SYNTHASE (.1.2.3) Lus10014576 [exp] 104 / 1e-27 AT5G17230 69 / 1e-15 PHYTOENE SYNTHASE (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007700 [exp] 510 / 0 AT5G17230 443 / 4e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G217950 [exp] 494 / 1e-175 AT5G17230 443 / 5e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G218000 [exp] 452 / 6e-159 AT5G17230 411 / 2e-142 PHYTOENE SYNTHASE (.1.2.3) Potri.017G138900 [exp] 443 / 2e-154 AT5G17230 630 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.002G056800 [exp] 435 / 8e-152 AT5G17230 555 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.005G205800 [exp] 434 / 1e-151 AT5G17230 549 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081466 [exp] 219 / 1e-70 AT5G17230 260 / 9e-87 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081433 [exp] 68 / 4e-13 AT5G17230 144 / 2e-41 PHYTOENE SYNTHASE (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00494 [flax] [poplar] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Lus10039186 pacid=23150593 polypeptide=Lus10039186 locus=Lus10039186.g ID=Lus10039186.BGIv1.0 annot-version=v1.0 ATGTTGTCGTTCAACACTTGCAACCATGTCACGATGATAGACAGAGGAATAATCAGTACAAGTGATCATCATCATTATCATCAGTCGTCTGTTAATGTTG TAAGAAGAAGAGGAGAAGCTGTGATTACAAACGTAATCACGGTCCCTAAACAGAAGGGATCCATGTCTTCGTCGAGGAGGACTTCCTCGACGACTTTGCT CAAAGAGTTGGGAATTCCTCTAGGTATGGACGAGATCGTGGAGAAGCAGCAGTACTGTTACAGTGGTGGCAGTGAAAGGAGAAGTCCGAAATTCGGCAGT GGATTTCTTGATGAGTCGTATGAAAGGTGTAGGGACATTTGCGCCGAATATGCCAAAACTTTCTACCTCGGAACTAGGCTAATGACAGAGGAGAGAAGAA AGGCAATATGGGCAATCTATGTGTGGTGCAGAAGAACTGACGAGCTAGTGGACGGGCCGAACGCAGAGTATATGACAACCAACTCGAAAGCGTTGGACAG ATGGGAAGAGAGACTTGAAGACATATTCAACGGCCGCCCGTACGACCTCCTCGATGCTGCTCTTACCGATACCATCTTCAAGTTCCCCCTCGACATCAAG CCGTTCAGGGACATGATCCAAGGGATGAGAATGGACACTTGGAAATCCCGGTACGACAACTTCCAAGAACTGTATCTTTACTGCTACTACGTCGCCGGCA CGGTGGGGCTGATGAGTGTTCCGGTGATGGGTATTTCTCCTCAATCCTCTGTTTCCGTTCAGACGATCTACGACGGAGCTCTCTACTTGGGGATTGGGAA TCAACTTACCAACATCCTTAGAGATGTCGGCGAAGATGCATCAAGAGGGAGAGTATATCTGCCTCAGGACGAGCTTGCCCAATTTGGTATATCCGAAAAA GATGTGTTATCAAGGAAAGTCACAGAAAATTGGAGGGAGTTCATGAGAGCTCAGATCACTAGGGCAAGATCCTACTTCAACCTAGCCGAGGAAGGTGCCT CCCACCTCGATGATGCTAGCCGTTGGCCGGTGTGGACGGCCTTATTGGTGTATAGAGAGATATTGGACGAGATTGAAGAGAATGATTACGACAACCTGAA CAAGAGAGCTTATGTTGGGAAGGCCAAGAAGCTCCTAATGTTGCCATTAGCTTATAGTAGAGCTCAATTCCGACCACCTAGCTTGCTTCTTTCATGA
AA sequence Show only first row Show all	>Lus10039186 pacid=23150593 polypeptide=Lus10039186 locus=Lus10039186.g ID=Lus10039186.BGIv1.0 annot-version=v1.0 MLSFNTCNHVTMIDRGIISTSDHHHYHQSSVNVVRRRGEAVITNVITVPKQKGSMSSSRRTSSTTLLKELGIPLGMDEIVEKQQYCYSGGSERRSPKFGS GFLDESYERCRDICAEYAKTFYLGTRLMTEERRKAIWAIYVWCRRTDELVDGPNAEYMTTNSKALDRWEERLEDIFNGRPYDLLDAALTDTIFKFPLDIK PFRDMIQGMRMDTWKSRYDNFQELYLYCYYVAGTVGLMSVPVMGISPQSSVSVQTIYDGALYLGIGNQLTNILRDVGEDASRGRVYLPQDELAQFGISEK DVLSRKVTENWREFMRAQITRARSYFNLAEEGASHLDDASRWPVWTALLVYREILDEIEENDYDNLNKRAYVGKAKKLLMLPLAYSRAQFRPPSLLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10039186 [exp]	0	1
					Lus10019052 [exp]	4.9	0.9795
AT3G11930			Adenine nucleotide alpha hydro...		Lus10029310 [exp]	10.6	0.9891
					Lus10026149 [exp]	15.7	0.9886
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10043247 [exp]	19.6	0.9878
AT4G35160			O-methyltransferase family pro...		Lus10017691 [exp]	24.0	0.9836
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10034971 [exp]	25.5	0.9778
AT1G72460			Leucine-rich repeat protein ki...		Lus10015678 [exp]	25.9	0.9817
AT1G65330	MADS	AGL37, PHE1	PHERES1, AGAMOUS-like 37, MADS...		Lus10004150 [exp]	26.6	0.9655
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10026288 [exp]	28.1	0.9751
AT5G04885			Glycosyl hydrolase family prot...		Lus10013388 [exp]	28.9	0.9534

Compare expression of checked genes

Lus10039186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.