Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19860 189 / 7e-62 Protein of unknown function, DUF538 (.1) AT1G55265 119 / 3e-34 Protein of unknown function, DUF538 (.1) AT3G07470 107 / 2e-29 Protein of unknown function, DUF538 (.1) AT3G07460 98 / 8e-26 Protein of unknown function, DUF538 (.1.2) AT5G54530 96 / 3e-25 Protein of unknown function, DUF538 (.1) AT1G61667 91 / 1e-23 Protein of unknown function, DUF538 (.1) AT5G16380 82 / 1e-19 Protein of unknown function, DUF538 (.1) AT1G02816 74 / 5e-17 Protein of unknown function, DUF538 (.1) AT4G02360 68 / 9e-15 Protein of unknown function, DUF538 (.1) AT1G02813 64 / 3e-13 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013752 [exp] 302 / 3e-106 AT5G19860 194 / 1e-63 Protein of unknown function, DUF538 (.1) Lus10013756 [exp] 109 / 2e-30 AT1G55265 137 / 2e-41 Protein of unknown function, DUF538 (.1) Lus10039182 [exp] 108 / 3e-30 AT1G55265 135 / 1e-40 Protein of unknown function, DUF538 (.1) Lus10029538 [exp] 96 / 3e-25 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 97 / 4e-25 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10018396 [exp] 95 / 8e-25 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 96 / 2e-24 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 94 / 3e-24 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10020218 [exp] 94 / 3e-24 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G008400 [exp] 215 / 5e-72 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 189 / 1e-61 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 125 / 9e-37 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 121 / 3e-35 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 116 / 2e-33 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 104 / 3e-28 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 102 / 1e-27 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 89 / 1e-22 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 87 / 1e-21 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.014G127500 [exp] 76 / 2e-17 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10039187 pacid=23150429 polypeptide=Lus10039187 locus=Lus10039187.g ID=Lus10039187.BGIv1.0 annot-version=v1.0 ATGGCGTCGTTAATGCCTAAAATTGTCTCTATGTTCCTCCTCGTCCTTTCTATTTCAAGCGGCCATGTACTCTCCGTCTCCGACGACGATCCTGCTGCTT CCGTCTACGAAATCCTGCCCAAGTACGGCCTCCCCAGCGGGCTGTTACCCGATTCGGTCGTCTCCTATACGCTCGACGACGACGGAAATTTCGCCGTGTC TCTGCAGAAGCCCTGTTACATACAGTTCGATTACTTGGTTTATTACGAGGAGAAGATCACCGGGAAGCTGAGTTTGGGGTCGATTACGGATCTGAAAGGG ATTCAGGTCCAGAAGTTCTTCCTCTGGCTGGATGTCGACGAGATCAAGGTCGATTTGCCTCCTGCCGGTTCGATTTACTTCCATGTCGGGTTTATCAACA AGAAGCTTGATGTGAACCAGTTTGAGACTGTACATTCTTGCCAAGACGGGGTCACTGGATCGCCCTGTAAAGGATTTTGGAAGCGTGTCTTGAGGTATGT CAACTTATGGAATGTTGACCTTTATAGATTGCTAGTGTTATGTTTATGA
AA sequence Show only first row Show all	>Lus10039187 pacid=23150429 polypeptide=Lus10039187 locus=Lus10039187.g ID=Lus10039187.BGIv1.0 annot-version=v1.0 MASLMPKIVSMFLLVLSISSGHVLSVSDDDPAASVYEILPKYGLPSGLLPDSVVSYTLDDDGNFAVSLQKPCYIQFDYLVYYEEKITGKLSLGSITDLKG IQVQKFFLWLDVDEIKVDLPPAGSIYFHVGFINKKLDVNQFETVHSCQDGVTGSPCKGFWKRVLRYVNLWNVDLYRLLVLCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19860			Protein of unknown function, D...		Lus10039187 [exp]	0	1
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018589 [exp]	1.0	0.8631
AT3G58030			RING/U-box superfamily protein...		Lus10029292 [exp]	6.7	0.7772
					Lus10008547 [exp]	13.0	0.7735
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10041879 [exp]	15.5	0.7921
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10039821 [exp]	16.1	0.8032
AT3G24120	GARP		Homeodomain-like superfamily p...		Lus10039123 [exp]	16.4	0.7546
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	19.7	0.7863
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	23.5	0.7675
AT1G79660			unknown protein		Lus10041631 [exp]	24.5	0.7237
AT4G35750			SEC14 cytosolic factor family ...		Lus10028388 [exp]	24.8	0.7610

Compare expression of checked genes

Lus10039187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.