Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G32940 226 / 2e-64 RNA-binding KH domain-containing protein (.1) AT5G51300 90 / 3e-18 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013751 [exp] 1079 / 0 AT3G32940 240 / 8e-70 RNA-binding KH domain-containing protein (.1) Lus10038932 [exp] 89 / 5e-18 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G216800 [exp] 331 / 4e-102 AT3G32940 249 / 5e-73 RNA-binding KH domain-containing protein (.1) Potri.001G008700 [exp] 330 / 2e-101 AT3G32940 236 / 4e-68 RNA-binding KH domain-containing protein (.1) Potri.001G126400 [exp] 92 / 4e-19 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.003G107200 [exp] 91 / 2e-18 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039188 pacid=23150332 polypeptide=Lus10039188 locus=Lus10039188.g ID=Lus10039188.BGIv1.0 annot-version=v1.0 ATGGCTACGGAAATTGAGCAGTCATCAATTTTGGAACTTCATAATGATAAGACATCTACAAGTTCATCTATCCCTTCAACAAGTGGACCAAAGGTCTCCA TTTTTGCAGCAAAATCTGGATTTGTGATTCCCAAAAACAAGCTTTCGGGCTCGCTGGTTCCAATCTTTAGAGGTAGTAAGAAGCTTGCTAGCAATGATGC AGTCAGTCAAGAAAGCAACAATGGCCATCAAAGGAAGACGAAATGGGGACCTGATCTGACACAAGATGCTACTGTTAAGAAGGGGAGAGTTTTAGCCTAT CAGACTCGAGTGGATCAAATTGCACAACAGCTGGAAAGGGGGATTCTTGAGCTAGGCGATCACAAAGACTCTGAAGTCTCTGATGAACATGCTGATCTAA AGACTTCCAGACCACACAATGAGGCTAAGGCTTTGGAAAGTTTGGAACTTGAGAGGCAGGAAGTCATTGGTGAAATACTTAAATTGAATCCAAGTTACAA AGTGCCACCTGACTATAAGCCTTCGCTTAAGGAGGCTGCAGTTGTTATCCCTGTAAAAGATCATCCTGAATATAATTTTGTTGGTCTCATTTGTGGCTCT GGAAATGAGACTCTGAAACGATTGGGGAAGGAAACTGGGGCAAAACTGAAAGTACATGGGATCAAATCTGGTACTAGGGAGAAGGTTGAAATTTCAACCT CTGGTGCGAATGAAAACGATGCTACTTATGATGAGTTGACTGTGCTTGTATCTGCTGACACATTTGAGAAAGTGGATTCTGCAGTTTCCGTTATTGAATT ACTAATCTCCTCTCTATCAGGAAATCTCGTTGCGGGGGATACTGCAGGTAATCAGAATCCACAGACACCTGTTTCTGCAGCGCCTGATGTCGGTAATCAG GAAGCCACACATTCAGCAGAAGCAGGACCTTCGCAAGGTGAATTTCGGCCTCAAGAATCATGGTATCCTGGAGCCGCACCACCTCCTGGTCCTGCATATC CACCGTCTTCTAGCGTCATTTCTTCTCAATTTCTTTCAGCAACAATGTTTAACAATCCTGGAGATGCTCACTTGCCATTCTTCAATACATCCACATTGCC ATCTCACATGGGTCCTCCATCAACTCCATCATCTATGTTCACTTCTACTCCTGTCCTATCCCATCCAACTAGGTATCCCTCGCCAAACCCTTATCCACCA AGAAATTTCCCGATGCAAGGCTCCCAACCTTTCCCAATGCAAGTAAATAGTTCAGCCCCACCTCCTTACAATAGTAACCAACGCCCACCTAGTGGACTGC ATCCGATCACAATGTCCTCGCAACCTCAACCTTCGTTCGTTCCGCAAGCACCTCTCGGAGACAATCCTTCTGCAGGACAAATGATTTCGCGGCCAGGTTT TGCTTCTCATGTTCCATATTCAAATGCTTCTGGACCCAATTTTGGTTTTCCAGGAAATGCTCAACCTAGGCAACCAACTCTTCAGTTGCCCAGCAGCCAA ATGAGCCATCAGTCTGCTGCCCCAAGCTCCTTTCCTGATCAACCACCTCAGCCGTTTGCTCAGCCATCTAGGCCGAAATTTCCTGCACATTTCTCTGGTT CAGAAACTCAGCAACCTATATCGGCTGCTGCAAGACCAAATGAACATCCTGGGATGATGCCTGGTACCGGACCGAATTTCTTTCCCATGAGACAACCCTC TGTAGCAGTTCGTCCACAGCATCCTGTTCGTGGCGAATTTTCATTTCAGATGCACCATCCACCAAATATGAACACACTTACCAGCAGGCCAACACATGGT CCAGCTGCACAAGCACCACCTTTTCCACCTTTCCGTCCAAATTTGAATCTTCATCCTGGCAGCAGCCATGAATTCCCTAGACCTCAGATGGGTCAGCCTC GTTTTGGCTACCCTTTTGGTGGGAACCCTGCTGGAGCTTCAATCTCACCCAGATTTGCAGCATTTCCAGATGGCAATCCACTGATGATGTCTAGGAGCAT GGCCCCCCGGCCAGGTTTTCCTCCTCAGATGAATCTGCCTCGAGAGTTTAGAGATCTGAATCAACAGCTCCGTCCGAATTTTGCTCTCGGATCTTCTTGG CCTGGTGCCAACCTTGCGCGGCAGCAAGTTTATGACCTGTTCTCACCCTCTGCTTCCCAGCAACCTGGAATGGGTAGAAAAACAGACAACGATCCCGAGT ACGAAGATTTGATGGCGTCAATGGGTCTGAAGTGA
AA sequence Show only first row Show all	>Lus10039188 pacid=23150332 polypeptide=Lus10039188 locus=Lus10039188.g ID=Lus10039188.BGIv1.0 annot-version=v1.0 MATEIEQSSILELHNDKTSTSSSIPSTSGPKVSIFAAKSGFVIPKNKLSGSLVPIFRGSKKLASNDAVSQESNNGHQRKTKWGPDLTQDATVKKGRVLAY QTRVDQIAQQLERGILELGDHKDSEVSDEHADLKTSRPHNEAKALESLELERQEVIGEILKLNPSYKVPPDYKPSLKEAAVVIPVKDHPEYNFVGLICGS GNETLKRLGKETGAKLKVHGIKSGTREKVEISTSGANENDATYDELTVLVSADTFEKVDSAVSVIELLISSLSGNLVAGDTAGNQNPQTPVSAAPDVGNQ EATHSAEAGPSQGEFRPQESWYPGAAPPPGPAYPPSSSVISSQFLSATMFNNPGDAHLPFFNTSTLPSHMGPPSTPSSMFTSTPVLSHPTRYPSPNPYPP RNFPMQGSQPFPMQVNSSAPPPYNSNQRPPSGLHPITMSSQPQPSFVPQAPLGDNPSAGQMISRPGFASHVPYSNASGPNFGFPGNAQPRQPTLQLPSSQ MSHQSAAPSSFPDQPPQPFAQPSRPKFPAHFSGSETQQPISAAARPNEHPGMMPGTGPNFFPMRQPSVAVRPQHPVRGEFSFQMHHPPNMNTLTSRPTHG PAAQAPPFPPFRPNLNLHPGSSHEFPRPQMGQPRFGYPFGGNPAGASISPRFAAFPDGNPLMMSRSMAPRPGFPPQMNLPREFRDLNQQLRPNFALGSSW PGANLARQQVYDLFSPSASQQPGMGRKTDNDPEYEDLMASMGLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G32940			RNA-binding KH domain-containi...		Lus10039188 [exp]	0	1
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10003684 [exp]	1.0	0.8460
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015201 [exp]	3.2	0.8161
AT4G16100			Protein of unknown function (D...		Lus10016841 [exp]	6.0	0.8063
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10033033 [exp]	7.2	0.7690
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	7.4	0.8055
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	7.7	0.8088
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10038886 [exp]	8.0	0.7710
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10013661 [exp]	12.2	0.7695
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	13.1	0.7703
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	17.7	0.8002

Compare expression of checked genes

Lus10039188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.