Plant FIBer expression Database

Lus10039189 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G32930 274 / 2e-93 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013750
[exp]
346 / 1e-121 AT3G32930 302 / 4e-104 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G216700
[exp]
279 / 3e-95 AT3G32930 300 / 3e-103 unknown protein
PFAM info
Representative CDS sequence
>Lus10039189 pacid=23150720 polypeptide=Lus10039189 locus=Lus10039189.g ID=Lus10039189.BGIv1.0 annot-version=v1.0
ATGGCCTGGTCTCTGGGAATACTGTGGGGATCGGATGCGGCGAACGCCACCACAAATAGACTTGGACTCATGACTCGGAACTTCACCGCTAACGCTATCC
AGGCTTCCCTGCTAGAGGCCCCTGTCCTATGGGCTGGCAGGGTTTTCGTTTTCTATGCGCTTTTGAGGGTCGGTTTAGCTGGATCCAAGTCCAATCCATT
TGTCTCCGATTTAGTTGGGGAAAGAGGTGGCAGGGGTGCTGCGGGTATTGCTGAAGGTGGTGATTTCGGGTTCTCTAAGTTGCTTCAGTCCATTACAGGA
GACCCTGATAAAGAAGCATCTGATAAGAGGAAATTAGTGAGCAAATGGCATCCCACCACTAAAGGGACACTTAGGAGGAACTACAGGGTGCCTTCGAAAA
CAGAAGGAAGACGTCTTCTTCGAGCAGTTGCAGCCTTGTTAGCCGAGGATGATCACTTCACTGATGCCACTTCCCACAAGGGATGCCAAATAAGAAGGGA
GAGTGCACACGGTGAGAGTGTGTGCTGTAACAACGTAAGGGCTCTTTTCGACGAGCTGCCAACGCCCCACCTGATTGTCGAAATCACTCCTTTTCCGGTC
GGATCTTTGACGGAAAAGGACTATCTCAAGGCTGAGAAGCTCGAAAGAGTGCTTCGGTCTGGTCCTTCTGTCTGA
AA sequence
>Lus10039189 pacid=23150720 polypeptide=Lus10039189 locus=Lus10039189.g ID=Lus10039189.BGIv1.0 annot-version=v1.0
MAWSLGILWGSDAANATTNRLGLMTRNFTANAIQASLLEAPVLWAGRVFVFYALLRVGLAGSKSNPFVSDLVGERGGRGAAGIAEGGDFGFSKLLQSITG
DPDKEASDKRKLVSKWHPTTKGTLRRNYRVPSKTEGRRLLRAVAALLAEDDHFTDATSHKGCQIRRESAHGESVCCNNVRALFDELPTPHLIVEITPFPV
GSLTEKDYLKAEKLERVLRSGPSV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G32930 unknown protein Lus10039189
[exp]
0 1
AT1G08570 ACHT4 atypical CYS HIS rich thiored... Lus10002640
[exp]
1.0 0.8554
AT1G11760 MED32 unknown protein Lus10034758
[exp]
4.5 0.8497
AT1G11760 MED32 unknown protein Lus10033295
[exp]
4.5 0.8232
AT3G52105 unknown protein Lus10042363
[exp]
6.5 0.7701
AT5G49060 Heat shock protein DnaJ, N-ter... Lus10006515
[exp]
7.9 0.8177
AT1G08570 ACHT4 atypical CYS HIS rich thiored... Lus10020254
[exp]
8.7 0.7720
AT3G18165 MOS4 modifier of snc1,4 (.1) Lus10018001
[exp]
13.0 0.8051
AT4G35090 CAT2 catalase 2 (.1.2) Lus10012258
[exp]
15.1 0.8222
AT4G00525 unknown protein Lus10030386
[exp]
16.9 0.8020
AT1G44920 unknown protein Lus10018656
[exp]
19.4 0.7906

Lus10039189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.