Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55230 326 / 5e-112 Family of unknown function (DUF716) (.1) AT1G55240 314 / 5e-107 Family of unknown function (DUF716) (.1) AT5G19870 297 / 5e-101 Family of unknown function (DUF716) (.1) AT1G49470 129 / 3e-35 Family of unknown function (DUF716) (.1) AT1G32120 96 / 1e-21 unknown protein AT3G01360 61 / 2e-10 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) AT1G55220 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013749 [exp] 467 / 2e-167 AT1G55230 386 / 1e-135 Family of unknown function (DUF716) (.1) Lus10023842 [exp] 126 / 3e-34 AT1G49470 275 / 6e-92 Family of unknown function (DUF716) (.1) Lus10021008 [exp] 110 / 4e-28 AT1G49470 257 / 2e-85 Family of unknown function (DUF716) (.1) Lus10014806 [exp] 108 / 1e-27 AT1G32120 424 / 1e-140 unknown protein Lus10038547 [exp] 107 / 4e-27 AT1G32120 429 / 3e-142 unknown protein Lus10028821 [exp] 64 / 2e-11 AT3G01360 289 / 5e-97 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Lus10017462 [exp] 51 / 5e-07 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G216600 [exp] 362 / 8e-126 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1) Potri.001G008900 [exp] 359 / 1e-124 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.003G216500 [exp] 328 / 2e-112 AT1G55230 383 / 3e-134 Family of unknown function (DUF716) (.1) Potri.001G009000 [exp] 327 / 4e-112 AT1G55230 364 / 7e-127 Family of unknown function (DUF716) (.1) Potri.009G108900 [exp] 121 / 2e-32 AT1G49470 308 / 5e-105 Family of unknown function (DUF716) (.1) Potri.003G100700 [exp] 95 / 1e-22 AT1G32120 382 / 2e-124 unknown protein Potri.001G132800 [exp] 94 / 3e-22 AT1G32120 377 / 2e-122 unknown protein Potri.005G122800 [exp] 71 / 1e-13 AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [flax] [poplar] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Lus10039191 pacid=23150610 polypeptide=Lus10039191 locus=Lus10039191.g ID=Lus10039191.BGIv1.0 annot-version=v1.0 ATGGGCACTTTGGTGGGTCATGTAGCACCAGGATCGGCCTTCTTCCTATGGGGTTTATGGCATCTTTTCAACCATACAAAACTCCACTCCCAAAACCCAA ATACCTACCTTGCTCGCCCATGGTTCCCGACCTCGAAATTCAAATACTTGGAGCTCTTGCTCATCATGATGGTGAGCTCCATCTCGATATCGATGGAGCT CTTCATCGGCCCTACGAGGCACCAGCCGCTCGACCCTGATGGCACCATCCCGTCCAACCACCTTCACAATTTCGAGCACTCTTCAATCTCCATGACTTTC TTCACTTACGCTGCCTTAGCCATCGCGCTTGACAAGGCCAAACCGATATCTAACTTCGGCATGACCCAATTGGTCGGAGCTGTAGCGTTCGCGCAACAGC TCTTGATGTTCCGCCTTCACTCTTCTGACCACATGGGCGTCGAAGGACAGTACCATTTGCTTCTCCAATCAGCCATTTTCGTCTGTCTGGTCACCACCCT CATGGGACTCGGCCTGCCTCGTAGCTTTATGGTCAGCTTCGTGAGGTCCGTCAGCATTGTCTTTCAGGGTGCTTGGATGGTGGTGATGGGCTATGCACTT TGGACACCTTCTCTAGTAGCAAAAGGGTGCTACATCAACCAAGAGGAAGGGCACCAAGTGGTGAGGTGCCAAGGTGAACAAGCTCTCCACAGGGCCAAAT CTCTTGTCAACATCCAATTCAGCTGGATGTTGATCGCCATCACAGCTTTTGCAGTGGGTTTCTACTTGGTCATGCACAAAGCTTACAGCCAAAACGTTGA CTACACATCGCTGACCACACCGGTTTCGGAAGAAGAAGATGATGATCATGATGTTGAATCGCAGAAGAAGACACAAAGTAGTTTCATTGAGCTGGGGGGG AAGTTGACATTGATAGGTAATTAA
AA sequence Show only first row Show all	>Lus10039191 pacid=23150610 polypeptide=Lus10039191 locus=Lus10039191.g ID=Lus10039191.BGIv1.0 annot-version=v1.0 MGTLVGHVAPGSAFFLWGLWHLFNHTKLHSQNPNTYLARPWFPTSKFKYLELLLIMMVSSISISMELFIGPTRHQPLDPDGTIPSNHLHNFEHSSISMTF FTYAALAIALDKAKPISNFGMTQLVGAVAFAQQLLMFRLHSSDHMGVEGQYHLLLQSAIFVCLVTTLMGLGLPRSFMVSFVRSVSIVFQGAWMVVMGYAL WTPSLVAKGCYINQEEGHQVVRCQGEQALHRAKSLVNIQFSWMLIAITAFAVGFYLVMHKAYSQNVDYTSLTTPVSEEEDDDHDVESQKKTQSSFIELGG KLTLIGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55230			Family of unknown function (DU...		Lus10039191 [exp]	0	1
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029385 [exp]	1.0	0.9389
AT3G58880			F-box/RNI-like superfamily pro...		Lus10035669 [exp]	2.8	0.9385
AT1G26800			RING/U-box superfamily protein...		Lus10012819 [exp]	6.1	0.8673
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10020713 [exp]	6.3	0.9111
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	6.9	0.9149
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	9.0	0.9356
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10023901 [exp]	9.9	0.8693
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	10.2	0.8965
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	10.4	0.9276
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009468 [exp]	14.2	0.9199

Compare expression of checked genes

Lus10039191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.